Gene Information

Name : dnaB (APL_0713)
Accession : YP_001053418.1
Strain : Actinobacillus pleuropneumoniae L20
Genome accession: NC_009053
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : 3.6.1.-
Position : 822613 - 824076 bp
Length : 1464 bp
Strand : -
Note : -

DNA sequence :
ATGCCTGAATACACGCCAACTAATAAAGAGAATTCAAGGGACAAGCAAGTGGAACAAATTGCGATTGCTCCTCACTCTAT
CGAAGCGGAACAAGCCGTATTAGGCGGTATTATGCTCAATAACGAACATTGGGATAACGTATCCGAACGTATTCAAGCCG
GTGATTTTTATAACTATGCACATCGTACTATTTTTGAGCAAATGGTGGAGTTGGTACGCCATAATCAACCGATTGATATT
ATTACGTTAGATCAAGCGTTGAAAGATAAAGGCGTACTACAAGATGTAGGCGGTTTTGCCTATTTGGCAGAGTTATCTAA
GAACACGCCGAGTGCGGCGAATATTCTTGCTTATGCCGATATTGTCCGTGACCGTTCGGATCTACGAGGGGTGATTTCGG
CCGGTAATCAAATTGCGGAAATGGCCTATCATACCAAAGGCAGAAGTTCAAAAGACGTGCTGGATGAAGCCGAGCGAATT
GTGTTTGAAATCGCAGAGAAACGTAATTCGGCGAATGAAGGCCCGCAAAAGATTGATGATATTTTAATTAATACGCTTGC
TCGTATCGAAATGCTTTCTAAAAATCGTCATAACGGCGGAGTAACGGGGGTTTCAACCGGTTTCCTCGATTTAAATAAAA
AAACCGCAGGTTTACAACCGTCGGATTTAATTATCGTTGCGGCGCGTCCGTCTATGGGGAAAACTACGTTTGCGATGAAC
TTATGTGAAAATGCTTCGTTACTGGATGTAGAAGATCCGAATGATTTGGACGAATACGGTAATCCTCGCAAAAAGCCGGC
GAAACCGGTATTAATTTTCAGTCTTGAGATGCCGGCGGACCAAATTATGATGCGTATGTTGGCTTCGCTTTCTCGCGTGG
ATCAAACCAAGATCCGAACCGGACAAATTCATGACGATGAAGATTGGGCGAAAATATCCAGTACGATGGCAATCTTGCAA
GAGCGCAAAAATATCTATATTGACGACAGTTCCGGTTTAACGCCGACCGAATTACGTTCTCGTGCAAGACGTGTATATCG
TGAGAACGGCGGGCTAAGTATGATCATGGTGGATTATTTGCAGTTAATGCGTGCGCCGGCGTTTTCCGATAACCGAACCC
TAGAGATTGCCGAAATTTCTCGATCTCTGAAAGCGTTGGCAAAAGAATTACAAGTGCCGGTTGTTGCACTTTCTCAGTTA
AACCGAAGTTTGGAACAACGCGCCGATAAACGACCGGTAAACTCGGATTTACGTGAATCCGGCTCTATCGAGCAAGATGC
GGACTTAATTATGTTTATTTATCGTGATGAAGTGTATAACGATAATTCCGATTTAAAAGGTATTGCCGAAATTATTATCG
GTAAGCAGCGTAACGGTCCGATTGGACGAGTGCGTTTAACTTTCCAAGGACAATATTCAAGATTTGATAACTATACAGGC
GGATCCTATGACGATGAGTACTAA

Protein sequence :
MPEYTPTNKENSRDKQVEQIAIAPHSIEAEQAVLGGIMLNNEHWDNVSERIQAGDFYNYAHRTIFEQMVELVRHNQPIDI
ITLDQALKDKGVLQDVGGFAYLAELSKNTPSAANILAYADIVRDRSDLRGVISAGNQIAEMAYHTKGRSSKDVLDEAERI
VFEIAEKRNSANEGPQKIDDILINTLARIEMLSKNRHNGGVTGVSTGFLDLNKKTAGLQPSDLIIVAARPSMGKTTFAMN
LCENASLLDVEDPNDLDEYGNPRKKPAKPVLIFSLEMPADQIMMRMLASLSRVDQTKIRTGQIHDDEDWAKISSTMAILQ
ERKNIYIDDSSGLTPTELRSRARRVYRENGGLSMIMVDYLQLMRAPAFSDNRTLEIAEISRSLKALAKELQVPVVALSQL
NRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSDLKGIAEIIIGKQRNGPIGRVRLTFQGQYSRFDNYTG
GSYDDEY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 1e-96 50
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 1e-97 49
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 2e-97 49
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-96 49
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 1e-94 47
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 4e-86 47
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 1e-88 46
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 1e-88 46
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 1e-81 45