Gene Information

Name : hcsB (APL_1696)
Accession : YP_001054385.1
Strain : Actinobacillus pleuropneumoniae L20
Genome accession: NC_009053
Putative virulence/resistance : Virulence
Product : capsule polysaccharide modification protein HcsB
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3562
EC number : -
Position : 1927399 - 1928715 bp
Length : 1317 bp
Strand : +
Note : -

DNA sequence : 
ATGATTAGTCATTATTTGGATGATTTGATTGAAAATTCGGATCGAATCCTGTTATTACAAGGTCCGATAGGCTCTTTTTT
TACCGATCTGTCGGAATGGTTACGTACTCAAAATAAAACGGTATTTAAAATCAATTTAAATGCCGGTGATGAATATTTTT
ACCCGAATAGCGTTTTAAATACGTTTGCTTATCGCGATAGCCTAGAAAACTTTCATCATTATCTAGTGAGTTTTTGTCAA
ACTCATCATATTGATCAGGTGATTTGTTTCGGCGATAACCGTAAGTACCATAAAATTGCAAAAAAAGTATGTCAATCTTT
ATCCGTTGGTTTCTGGGCGTTTGAAGAGGGATATTTCCGTCCTAATTACGTTACTTTTGAAAAAAGCGGGGTAAACGCCT
ATTCGCCGATTCCATGTGATGCAACGTATTTCTCTCAATTTGAGAACTTACCCGAGCCGGCAAAACCGCAGCATGTCGCA
AAAGGCTTTTGTCCGATGGCGAAATTGGCGATTCAATATTACGTTTCCGCTTATTATCGTCGTCACCATTATTCTAAATA
TCGCCATCATCGTTTATTAAATGTCTTATATTATGTGAAATTATGGTCGATATCCGGAGTGAAACGTTTACACTATTATC
TATATGATTGGAATTTTGCAAAACGAGTAGAAAAAGGGGAATTCGGCGATTTCTTTATTTTGCCTTTACAGGTTTATGAC
GATAGCCAAATTCTGGTTCACAGCGATTATTCGAGCGTAGAGGCGATTTTACGCGAAGTGTTATTATCTTTTGCGACGAA
AGCACCTAAGCACCTACGTTTGATCGTAAAACATCACCCGATGGACCGCGGCTTTATTGATTACGGTAAAGTGATTGACG
AATATCTGGAGCAATATCCCGAACTGAAAAAACGAATTTACTATATTCACGATGTACCGATGCCGGTTTTCTTACGTCAC
GGTAAAGGAATGGTCACGCTAAACAGTACCAGCGGTATTTCGGCGTTATTACACAATATGCCGGTGAAAACCTTAGGTCG
TGCCAATTATGATTTTGCCGGATTAACCTATCAAGGTAGCTTAGACGACTTTTGGAGCAATTCGGAAAAACCGGATGACG
GATTATTTAATGCCTACCGAAAATTCCATCTACATAAAACGCATATTAACGGTAGCTTCTATAACAAAGTGATTTTGCGT
TATCCGTATAATCAAAGCTACACCTTAACACAACAACCGGTTATTTTTTGTAAAATCTTCACAAAAAATAACCGCTTTTC
TAATCTATTCTCTAAAAGATCACTTCTAAACGCATAA

Protein sequence : 
MISHYLDDLIENSDRILLLQGPIGSFFTDLSEWLRTQNKTVFKINLNAGDEYFYPNSVLNTFAYRDSLENFHHYLVSFCQ
THHIDQVICFGDNRKYHKIAKKVCQSLSVGFWAFEEGYFRPNYVTFEKSGVNAYSPIPCDATYFSQFENLPEPAKPQHVA
KGFCPMAKLAIQYYVSAYYRRHHYSKYRHHRLLNVLYYVKLWSISGVKRLHYYLYDWNFAKRVEKGEFGDFFILPLQVYD
DSQILVHSDYSSVEAILREVLLSFATKAPKHLRLIVKHHPMDRGFIDYGKVIDEYLEQYPELKKRIYYIHDVPMPVFLRH
GKGMVTLNSTSGISALLHNMPVKTLGRANYDFAGLTYQGSLDDFWSNSEKPDDGLFNAYRKFHLHKTHINGSFYNKVILR
YPYNQSYTLTQQPVIFCKIFTKNNRFSNLFSKRSLLNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipB NP_273146.1 capsule polysaccharide modification protein Not tested IHT-A Protein 6e-101 52

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hcsB YP_001054385.1 capsule polysaccharide modification protein HcsB VFG0705 Protein 3e-123 64
hcsB YP_001054385.1 capsule polysaccharide modification protein HcsB VFG0693 Protein 3e-123 64
hcsB YP_001054385.1 capsule polysaccharide modification protein HcsB VFG0260 Protein 3e-101 52