Gene Information

Name : kpsC (APL_1695)
Accession : YP_001054384.1
Strain : Actinobacillus pleuropneumoniae L20
Genome accession: NC_009053
Putative virulence/resistance : Virulence
Product : capsule polysaccharide modification protein LipA
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3563
EC number : -
Position : 1925307 - 1927376 bp
Length : 2070 bp
Strand : +
Note : -

DNA sequence : 
GTGGCGCAATGTTCTATCACTAAATCGTTAATTTTCTCACGCGGAATTTTAAAGATCCCTCATTTAAATGCTTTCTTACA
TGATAGTGAGTTAATCTCTTATTCTCGTTTGACCAAAACGATTCGAGCGGATAATGTCATCGGTTGGGGATTACGCCCTT
CTGCGGACAAAGCTCGTGCTTATGCCGAACAACATTATCTTCCTTATATTGCATTAGAAGACGGTTTTTTACGTTCGCTC
GGGCTGGGTGTTATGGGATACCCGCCTTTCTCCGTTGTGTATGATGATGTCGGTATTTATTACGACACGACACGTTCATC
CCGCTTAGAGCAGCTGATTCTCAGTTCGCATTTTAGCGCAACCGATCTTCAACAGGCGGAGCAAGCCGTGCGGCTAATTG
TTCGTCATCAGTTATCAAAATATAACCATAATCTTGATTATGTTTCCAATGAACCGAAAACAAGTGAAATCGTATTAGTC
ATAGATCAAACCTTTGGTGATATGGCGGTAAAATACGGTCGGGCGAATGAATCCGATTTCCAACAAATGCTGGATGCGGC
GATTGGTGAAAATCCCGATGCTCAAATTTGGGTAAAAACGCATCCGGATGTAATTAGCGGAAAGAAAAAAGGTTATTTAA
CCGATTTACATCGTTACGGTAACCGAATTCGTTTATTCGCGGAATACGTTAATCCTATCTCCCTGTTGAGTCGGGTTGAT
AAAGTGTATTGTGTCACTTCACAGATGGGGTTTGAGGCACTGTTATTAGGAAAAAAAGTCGTTACGTTTGGTATTCCTTG
GTTTGCCGGTTGGGGTATTACGGACGATAGACATCCGGATATAGATATTTTAAAACTTGAGCAGCGTCGGAAAAACCGTT
CTTTTATTCAATTATTTGCGGCAGCCTATCTGCAATATAGCCGTTATATTAATCCGTATTCGGGAAAAGTCGGTACGATT
TTTGATGTTATCGATTATCTGAGCAAAGTGAAAATATTGAATCAACGATTAAGCGGTCATCTTTATTGTGTCGGTATGTC
GTTGTGGAAACGAGCCGTGATTAAGCCGTTTTTTAACTTGCCTTTATGCCGATTACATTTTGTCGGCTCATTAAAATCGT
TAGAAAAACGCGTTTTTGAGAAGAATGCGAGATTACTTCTTTGGAGCCAAGGTAAACCGGAAATTCTCGCGTTTGCCGAA
AAACATAATTTACCGCTTTTACGTATGGAAGACGGGTTTATTCGCTCCGTAGGACTCGGTTCTAATTTAGTTGCACCGTT
ATCATTGGTGATTGATGATTTAGGTATTTATTTTAATGCACAAACGCCTTCTCGTTTAGAAGAGATTTTATTGCATCAAG
AATTTAGTGAGCAGGATTTAGTCCTAGCGAAAAAATTACAAACTCGCTTATTAGAAGCAAATATCGGCAAATATAATGTG
GGAAGTGCCGGCTTCCAACTTAATGTCACGGATAAACGTACCATTTTAGTACCCGGTCAGGTGGAAGATGACGCTTCTAT
TCGTTTCGGTTCTCCGGAAATTAAGAAAAATTTGGATTTGTTGCGTAAGGTTAGAGAATTAAATCCTAATGCTTACATTA
TTTATAAACCGCATCCGGATGTAGTTAGCGGTAATCGACAAGGGCATATACCGACCGAACAAGCGGTCGAATTTGCCGAT
GAAATTGTCGAAAACGCCAATATCTTAGACTGCATCAACCAAGTTGATGAAGTACATACGATGACCTCATTAGCCGGTTT
CGAAGCTCTATTACGTGGGAAAATCGTGCATTGTTACGGACTGCCTTTTTATTCAAATTGGGGATTAACCGAAGATTATC
TTTCGCTTGAACGTCGTCACAGAAAGTTATGTTTGGAAGAACTTATTTCGGCGGTACTGGTATATTATCCTCAATATGTC
GATCCGGAAAATGCGACAATGATTAATGCGGAACAAGCGATTGAAATTCTGCAACAACAAAAACAACAGCTATCACATAG
TGGTATTAAACGTCCGTGGATCGCCAAACAGTTTGGTAAATTGAAACAGCTTTATCGCACATTGCAATAA

Protein sequence : 
MAQCSITKSLIFSRGILKIPHLNAFLHDSELISYSRLTKTIRADNVIGWGLRPSADKARAYAEQHYLPYIALEDGFLRSL
GLGVMGYPPFSVVYDDVGIYYDTTRSSRLEQLILSSHFSATDLQQAEQAVRLIVRHQLSKYNHNLDYVSNEPKTSEIVLV
IDQTFGDMAVKYGRANESDFQQMLDAAIGENPDAQIWVKTHPDVISGKKKGYLTDLHRYGNRIRLFAEYVNPISLLSRVD
KVYCVTSQMGFEALLLGKKVVTFGIPWFAGWGITDDRHPDIDILKLEQRRKNRSFIQLFAAAYLQYSRYINPYSGKVGTI
FDVIDYLSKVKILNQRLSGHLYCVGMSLWKRAVIKPFFNLPLCRLHFVGSLKSLEKRVFEKNARLLLWSQGKPEILAFAE
KHNLPLLRMEDGFIRSVGLGSNLVAPLSLVIDDLGIYFNAQTPSRLEEILLHQEFSEQDLVLAKKLQTRLLEANIGKYNV
GSAGFQLNVTDKRTILVPGQVEDDASIRFGSPEIKKNLDLLRKVRELNPNAYIIYKPHPDVVSGNRQGHIPTEQAVEFAD
EIVENANILDCINQVDEVHTMTSLAGFEALLRGKIVHCYGLPFYSNWGLTEDYLSLERRHRKLCLEELISAVLVYYPQYV
DPENATMINAEQAIEILQQQKQQLSHSGIKRPWIAKQFGKLKQLYRTLQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 0.0 61
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 1e-140 51
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 7e-141 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsC YP_001054384.1 capsule polysaccharide modification protein LipA VFG0704 Protein 0.0 64
kpsC YP_001054384.1 capsule polysaccharide modification protein LipA VFG0692 Protein 0.0 63
kpsC YP_001054384.1 capsule polysaccharide modification protein LipA VFG0259 Protein 0.0 61