Gene Information

Name : yfeD (APL_0127)
Accession : YP_001052840.1
Strain : Actinobacillus pleuropneumoniae L20
Genome accession: NC_009053
Putative virulence/resistance : Virulence
Product : iron transport system membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 142799 - 143629 bp
Length : 831 bp
Strand : -
Note : -

DNA sequence : 
ATGAATGAGTTAGTGCTATGGTTCGTTGAGCCTTTTGCATTTGAATTTATGCAAACCGCTTTGTTTACTGCGGTATTAGT
CGCTTCCGTTTGCGCGGTATTGTCTTGTTATTTGATTTTAAAAGGCTGGTCGCTTATGGGCGATGCAATTTCTCATGCAG
TATTGCCGGGAGTGGTAATATCCAGCTTACTCGGTTTACCTTTAGCTATAGGGGCATTTACTTCCGGATTATTTTGTGCG
ATTTCCGTCGGCTATCTCAAAGAGAATTCTCGTTTAAAAGAAGATACCATTATGGGCATTATGTTTTCCGGCTTATTTGC
GCTTGGTATCGTGCTATTTACCGCTTTGCCGAGCGACCAACATCTCACTCACTTGTTATTCGGTAATTTGCTCGGGGTAA
CTCAAAACGAATTAATTCAAACTATCATCATTTGCACGCTAACTTTCAGCGTTATTATCTTTAAACGTAAAGATTTCTTG
CTCTATTGCTTTGATAGTAATCATGCCAAAGTTATCGGTTTACCGGTAAAACGGTTACATTACGGCTTACTTGCACTGTT
AGCCTTAACCATCATTAGTGCAATGCAGGTTGTCGGTGTGATCTTAGTCGTTGCAATGCTCATTGCTCCCGGAATTACCG
CCTACCAATTATCAAACCGATTCGACTATATGTTAGCAATAGCGATGACGATTGCGATAAGTTCATCCGCTTTAGGTACG
ATTTTGAGTTATCATATTGATGCAGCTACCGGCCCGACAATTATTCTAATTCAATCGATTGTTTTTGTGATTGTGCTAAT
TAGCAAGCACTTTCAAAAGCGCAAGCGGTAA

Protein sequence : 
MNELVLWFVEPFAFEFMQTALFTAVLVASVCAVLSCYLILKGWSLMGDAISHAVLPGVVISSLLGLPLAIGAFTSGLFCA
ISVGYLKENSRLKEDTIMGIMFSGLFALGIVLFTALPSDQHLTHLLFGNLLGVTQNELIQTIIICTLTFSVIIFKRKDFL
LYCFDSNHAKVIGLPVKRLHYGLLALLALTIISAMQVVGVILVVAMLIAPGITAYQLSNRFDYMLAIAMTIAISSSALGT
ILSYHIDAATGPTIILIQSIVFVIVLISKHFQKRKR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-54 50
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-54 50
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-54 50
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-53 49
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-53 49
EF0576 NP_814341.1 cation ABC transporter permease Not tested Not named Protein 1e-30 43
ef0094 AAM75297.1 EF0094 Not tested Not named Protein 7e-31 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_001052840.1 iron transport system membrane protein BAC0442 Protein 1e-69 62
yfeD YP_001052840.1 iron transport system membrane protein BAC0352 Protein 9e-54 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeD YP_001052840.1 iron transport system membrane protein VFG0528 Protein 8e-54 49