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Name : clpB (APL_1087) Accession : YP_001053784.1 Strain : Actinobacillus pleuropneumoniae L20 Genome accession: NC_009053 Putative virulence/resistance : Virulence Product : chaperone ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1257302 - 1259875 bp Length : 2574 bp Strand : + Note : - DNA sequence : ATGAATTTCGAAAAATTTACTACCAAATTGCAAGAAGCCCTTGCAGAAGCACAATCGTTAGCTATCGGAAAAGATAATAA CTATATTGAACCGGCACATTTACTTTATGCGTTAGTCAAACAACCGGACGGCTCTATCGCCCCGCTATTTACTGCACTTA ATGTACAACCGCAACGTATTTTGAGTGAATTAGAGACGATTTTAAACCGCTTACCGACCGTATCCGGCGGTACAACCCAA CCGTCACAACAATTAATTCGCCTGTTAAATCAATGCGATAAACTAGCGCAGCAATTCGGTGACAGCTTTATTTCATCGGA ATTATTCGTGCTTGCCGCACTGGACGATAACGGCGATTTAGGCAAATTATTAAAACAATTTGGCTTGACTAAAGAAAAAG TAAACGCAGCCATCAGCCAAATTCGAGGAGGAGAAAACGTGAATAATCAAAACGCAGAAGAAACCAGACAGGCCCTTCAA AAATATACTATCGATCTCACAGAAAGAGCCAAAGCCGGTAAATTAGATCCGGTCATCGGGCGTGATGAAGAAATCCGCCG TGCAGTACAAGTTTTACAACGCCGTACTAAAAATAACCCGGTATTAATCGGTGAACCTGGGGTCGGTAAAACTGCGATCG TAGAAGGCTTGGCACAACGTATCGTCAACGGCGAAGTGCCGGAAGGTTTAAAAAATAAACGTGTACTTTCTCTCGATATG GGCGCATTAATTGCTGGTGCAAAATATCGCGGCGAATTTGAAGAACGTCTAAAAGCGGTACTTAACGAATTAGCCAAAGA AGAAGGTCAGGTTATCTTATTTATTGATGAAATTCACACCATGGTCGGTGCGGGTAAAACAGACGGCGCAATGGATGCCG GTAACTTACTCAAGCCGTCACTTGCTCGCGGCGAATTACATTGCGTTGGGGCAACTACGTTAGACGAATACCGCCAATAT ATCGAAAAAGATGCGGCACTTGAACGTCGTTTCCAAAAAGTATTAGTGGACGAACCGACCGTTGAGGATACGATTGCAAT TTTACGCGGCTTGAAAGAACGTTATGAAATTCATCACCACGTACAAATTACCGACCCGGCAATTGTCGCGGCGGCAACGC TTTCGCACCGTTATATTTCCGACCGCCAATTACCGGATAAAGCGATCGATTTAATTGATGAAGCCGCATCCAGTTTACGT ATGGAAATCGATTCTAAACCTGAGCCGTTGGATAAACTTGAACGCCGTATTATTCAACTTAAATTGGAACGCCAAGCGTT ACAAAAAGAGGAAGATGAAGCAAGCCGCCAACGTCTTGCAAAATTAGATGAAGAATTGACCGCTCGCGAGCGTGAATATT CCGAATTGGAAGAAGTTTGGAAAGCGGAGAAATCAGCATTACTCGGTACGCAACATATCAAAACCGAGTTAGAAAATGCC CGTATCGAAATGGATCAGGCTCGCCGTGAAAATAATTTCGAGAAAATGTCCGAATTGCAATACGGTAAAATTCCGGCATT GGAAAAACAATTACACGAAGCGGTAAAACGCGAGGAAGAAGGCAGTGAAAATCAACTGCTTCGTACCAAAGTCACCGAGG AGGAAATCGCAGAAGTGCTTTCAAAAGCGACCGGTATTCCGGTTTCCAAAATGATGGAAGGCGAAAAAGAAAAACTATTG CGTATGGAAGAAGTGTTACACAGCCGTGTCATCGGACAAAATGAAGCGGTAGAAGCGGTGGCAAATGCAATTCGCCGTAG CCGTGCCGGATTGTCGGATCCGAATCGTCCGATCGGTTCGTTCTTATTCCTTGGCCCGACCGGGGTCGGTAAGACCGAAC TTTGCAAAACCTTGGCGAATTTCCTATTCGATGATCCTGATGCGATGGTACGTATCGATATGTCGGAATTTATGGAAAAA CACAGCGTTTCTCGTTTAGTCGGCGCACCTCCGGGCTATGTCGGTTATGAAGAAGGCGGTTATTTAACCGAAGCGGCTCG CCGCCGTCCATATTCGGTAGTATTACTCGATGAAGTGGAAAAAGCGCACCCTGACGTGTTTAATATCTTGCTTCAAGTGT TGGATGACGGTCGTTTAACCGACGGTCAAGGTCGTACGGTGGATTTTCGTAATACGGTAGTAATTATGACTTCAAACTTA GGTTCACATTTAATCCAAGAAAATCCGGAATTAGATTATGCTGGAATGAAAGAAGTAGTGATGTCAGTGGTAGGACAACA TTTCCGTCCTGAATTTATCAACCGTATTGATGAAACTGTGGTGTTCCACCCACTTGGTCAAGCACATATCCGTGCGATTG CTCGCATTCAGTTACAACGTTTAATCGCTCGCCTTGCGGAACGCGGTTACGAAGTAACAGTTACCGATGCGGCATTAGAC CATATCGGCAAAGCCGGCTTTGACCCGTTATTCGGTGCAAGACCGCTCAAACGTGCGATTCAGCAAGAGCTTGAAAATCC GCTTTCACAACAGATCTTAAGCGGCAAATTATTACCGAACAGCCCAGTTGTGGTGGACTATCAAAATGACCGATTAAGCA TTAGCAACAGCTAA Protein sequence : MNFEKFTTKLQEALAEAQSLAIGKDNNYIEPAHLLYALVKQPDGSIAPLFTALNVQPQRILSELETILNRLPTVSGGTTQ PSQQLIRLLNQCDKLAQQFGDSFISSELFVLAALDDNGDLGKLLKQFGLTKEKVNAAISQIRGGENVNNQNAEETRQALQ KYTIDLTERAKAGKLDPVIGRDEEIRRAVQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSLDM GALIAGAKYRGEFEERLKAVLNELAKEEGQVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYRQY IEKDAALERRFQKVLVDEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASSLR MEIDSKPEPLDKLERRIIQLKLERQALQKEEDEASRQRLAKLDEELTAREREYSELEEVWKAEKSALLGTQHIKTELENA RIEMDQARRENNFEKMSELQYGKIPALEKQLHEAVKREEEGSENQLLRTKVTEEEIAEVLSKATGIPVSKMMEGEKEKLL RMEEVLHSRVIGQNEAVEAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLANFLFDDPDAMVRIDMSEFMEK HSVSRLVGAPPGYVGYEEGGYLTEAARRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL GSHLIQENPELDYAGMKEVVMSVVGQHFRPEFINRIDETVVFHPLGQAHIRAIARIQLQRLIARLAERGYEVTVTDAALD HIGKAGFDPLFGARPLKRAIQQELENPLSQQILSGKLLPNSPVVVDYQNDRLSISNS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 8e-110 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_001053784.1 | chaperone ClpB | VFG2076 | Protein | 7e-111 | 44 |
| clpB | YP_001053784.1 | chaperone ClpB | VFG2084 | Protein | 7e-112 | 41 |
