Gene Information

Name : Sbal_3981 (Sbal_3981)
Accession : YP_001052318.1
Strain : Shewanella baltica OS155
Genome accession: NC_009052
Putative virulence/resistance : Virulence
Product : sigma-54 dependent trancsriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 4669480 - 4670781 bp
Length : 1302 bp
Strand : -
Note : PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: sdn:Sden_3661 sigma-54 factor, interaction region

DNA sequence : 
GTGGGTGGCCTAAGTATACGGATTGAAGGATTAAACATATCTGCGGAACTTGCATGCACAATCGCACAGGGAGATTTTTA
TCTGTGGAATGATGCAATGGAGTCGTCTTGGCTCACGATCGTTAACTTATCAGATTGTCGTCCTTGTGATGTAAAATCTT
ATCTTGCCCGTTTTCCTTGCCGTAATATTGTCGCGTTATTAGCGCCAGAACAAGGTGAGTTAGCCGCGGCGGCAATGCGT
GCTGGTGTACAAGATTATCTATTAATTCCCGTAGAAACCGAGCAACTGCTAGCCTCAATACAACGTTTACGCCGTTTAGA
GTTACCTGATTCTAGTTTGGTTGTATCGGCTGCTGTTAGCCGGCAACTATTGATGTTGGCCCATAGGGCAGCAACCACTG
AGGCCAGTGTTTTATTATTGGGTGAAAGTGGTACTGGCAAGGAGCCGCTTGCTCGTTATATTCATCGTCATTCTTCTCGT
TCTCATAAGCCTTTCGTTGCGATTAACTGCGCCGCCATCCCTGAAAGTATTCTTGAATCTGTCTTATTTGGTCATGTTAA
AGGCGCCTTTACTGGTGCTATTTGCGATAAAGCAGGCAAATTTGAGCAGGCAAATGGCGGCACTTTATTACTCGATGAAA
TTGGTGAAATGCCCTTGCCGTTGCAGGCAAAATTACTCCGAGTGTTACAGGAGCGTGAAGTCGAAAGACTCGGCGGGCAG
CATGCTATTCCACTGGATATCAGAATCATTGCCTCTACCAATCGCGACTTAAGACAGGCCGTTGAGTTTGGGCATTTTAG
GGAGGATCTGTTCTACCGTTTAGATGTTTTGCCTTTAAAAATCGCGCCTTTAAGAGAACGTAAGGCTGACATCCTCCCTT
TAGCTGAGCATTTCTTAGGTTTATATGGTCAGTCCGATAACGCAAGTCGTTGCTATTTCAGTGAGCACGCAAGGCAAGTG
CTTGTTACCTATGATTGGCCGGGAAATGTTAGAGAGCTAGAAAATTGTATTCAGCGGGCATTAGTGATGCGCAGAGGTCA
GGCTATTCAAGTTGCTGAACTCGGATTAAACATTCAAGAAGAAACGCTCGAGTTAGAGCCTTTGGGCGCGACGGTAGGAC
TTAAAGCTTCAAAACAGCAGGCAGAATTTCAATATATTATTGATGTACTTAAACGTTTTAATGGACAACGCACTTTAAGT
GCGCAGGCGCTAGGGATGACGACTAGAGCCTTAAGATATCGCCTCGTGCAAATGCGAGAAGCAGGGATTGATATTGAAAC
GTTATTAGATCAAGCAGCGTGA

Protein sequence : 
MGGLSIRIEGLNISAELACTIAQGDFYLWNDAMESSWLTIVNLSDCRPCDVKSYLARFPCRNIVALLAPEQGELAAAAMR
AGVQDYLLIPVETEQLLASIQRLRRLELPDSSLVVSAAVSRQLLMLAHRAATTEASVLLLGESGTGKEPLARYIHRHSSR
SHKPFVAINCAAIPESILESVLFGHVKGAFTGAICDKAGKFEQANGGTLLLDEIGEMPLPLQAKLLRVLQEREVERLGGQ
HAIPLDIRIIASTNRDLRQAVEFGHFREDLFYRLDVLPLKIAPLRERKADILPLAEHFLGLYGQSDNASRCYFSEHARQV
LVTYDWPGNVRELENCIQRALVMRRGQAIQVAELGLNIQEETLELEPLGATVGLKASKQQAEFQYIIDVLKRFNGQRTLS
AQALGMTTRALRYRLVQMREAGIDIETLLDQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpR AAC35799.1 transcriptional regulator Virulence Hrp PAI Protein 1e-40 42
hrpR AAT96162.1 HrpR Virulence T-PAI Protein 2e-42 41
hrpR AAT96216.1 HrpR Virulence T-PAI Protein 2e-42 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal_3981 YP_001052318.1 sigma-54 dependent trancsriptional regulator BAC0467 Protein 3e-62 42
Sbal_3981 YP_001052318.1 sigma-54 dependent trancsriptional regulator BAC0089 Protein 1e-55 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal_3981 YP_001052318.1 sigma-54 dependent trancsriptional regulator VFG1249 Protein 1e-78 49
Sbal_3981 YP_001052318.1 sigma-54 dependent trancsriptional regulator VFG0116 Protein 2e-54 43