Gene Information

Name : Sbal_1976 (Sbal_1976)
Accession : YP_001050349.1
Strain : Shewanella baltica OS155
Genome accession: NC_009052
Putative virulence/resistance : Virulence
Product : type III secretion protein SpaR/YscT/HrcT
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 2289557 - 2290357 bp
Length : 801 bp
Strand : +
Note : TIGRFAM: type III secretion protein SpaR/YscT/HrcT; PFAM: type III secretion system inner membrane R protein; KEGG: cvi:CV2609 type III secretion system EscT protein

DNA sequence : 
ATGACAACTCTGCTGCCCAATCTGTTAACGGCACAACTTCCTGTATTGGCACTCTGTATGATGCGACCATTAGGCATGAT
GCTGTTATTGCCCCTATTCAAAGGCGGGGCTATGGGTAGCGCATTAATCCGTAATAGCCTGATTTTAATGTTTGCTTTAC
CTACTGTGCTGGCAATGGATGAAATGCAGCCGATACTGCAACAGGCCGACACTTGGATGCTCATCAGCCTATTTGGCAAA
GAAATGATTGTAGGCGTGTTACTTGGTTTTTGCGCCGCTATTCCCTTTTGGGCAATAGATATGGCGGGATTTGTGATTGA
CACCATGCGGGGAGCATCCATGTCGACTGTGCTTAATCCCTTGATGGGACTGCAATCATCGATTTATGGCATGCTGTTTA
CTCAAGTTCTGACAGTGCTGTTTTTAGTCTCGGGTGGTTTTAATTTTCTGTTAACCGCACTCTATCAATCCTATCAACAA
CTTCCCCCAGGATTTAATTTAACGCTAGCCCAACCCTTGATGGTGTTTATAGCCCATGAGTGGCAATTGATGTGCCAACT
TTGCCTCAGTTTTGCCATGCCCGCCATGGTGATTATGATCTTAGTCGATGTCGCCTTAGGGCTAGTAAACCGCTCGGCGC
AGCAGTTAAATGTGTTCTTTTTGTCTATGCCCATTAAAAGCGCTTTGGTCTTACTGTTATTAATCTACAGCCTACAGTTT
GCCTTGTCCCATTACCTGCAGACCATTTCTGGGGTAGAGCAGCACGTAGATATTTTGTTTGGACTCTTAGCAGGGCACTA
G

Protein sequence : 
MTTLLPNLLTAQLPVLALCMMRPLGMMLLLPLFKGGAMGSALIRNSLILMFALPTVLAMDEMQPILQQADTWMLISLFGK
EMIVGVLLGFCAAIPFWAIDMAGFVIDTMRGASMSTVLNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNFLLTALYQSYQQ
LPPGFNLTLAQPLMVFIAHEWQLMCQLCLSFAMPAMVIMILVDVALGLVNRSAQQLNVFFLSMPIKSALVLLLLIYSLQF
ALSHYLQTISGVEQHVDILFGLLAGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 1e-43 54
ssaT YP_216429.1 secretion system apparatus protein SsaT Virulence SPI-2 Protein 6e-40 50
ssaT NP_805092.1 type III secretion protein Virulence SPI-2 Protein 1e-39 49
ssaT CAA68201.1 secretion system apparatus, SsaT Virulence SPI-2 Protein 7e-39 49
ssaT NP_460386.1 type III secretion system apparatus protein Virulence SPI-2 Protein 9e-39 49
ssaT NP_456107.1 putative type III secretion protein Virulence SPI-2 Protein 1e-39 49
lscT AAO18038.1 LscT Virulence TTSS locus Protein 1e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal_1976 YP_001050349.1 type III secretion protein SpaR/YscT/HrcT VFG0521 Protein 4e-39 49