Gene Information

Name : Sbal_1962 (Sbal_1962)
Accession : YP_001050335.1
Strain : Shewanella baltica OS155
Genome accession: NC_009052
Putative virulence/resistance : Virulence
Product : YscJ/HrcJ family type III secretion apparatus lipoprotein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 2274971 - 2275690 bp
Length : 720 bp
Strand : +
Note : TIGRFAM: type III secretion apparatus lipoprotein, YscJ/HrcJ family; PFAM: secretory protein YscJ/FliF family protein; KEGG: cvi:CV2588 type III secretion system apparatus lipoprotein

DNA sequence : 
ATGAAATATTTTAAATGGTCAATATTGTTGCTCGTCTTCGCGTTGACTGGGTGCAAAGTCGATCTCTATCGAGATCTTCC
CCAAGATGAAGCGAATCAAATGGTTGCCCTGTTGATGCTCAATCACATAGATGCCAGTGCGGAAGCAGATCAAAAATCAG
GCAATGTGTCTCTAAAAATAGAGAAAGACCAATTTATCAATGCCGTTGAATTACTGAGGCAAAATGGCTTTCCTAAACCT
CATTATGCCAATATCGAGGATTTGTTTCCTTCGGGTCAGTTAGTGACTTCACCCGCCCAAGAGGAAGCGAAAATGGGTTA
TCTAAAAGAGCAGCAACTCGAGCGTACCTTGTCGAGTATGGATGGGGTGATCAGCGCTAGAGTGTCTATTGCCGAACCTG
CACCCGACACCGGGCGTCAGCTTGCACAAACTAAGTCGGCCTCTGTATACATTAAATATTCACCTCAGGCTAACTTAACA
AATACGGAAAATCAGATTAAGAGCTTAGTGCAGAATGCCGTTCCAGGACTGAGCTACGACAATATCAGTGTCTTTTTGCA
AGCCGCAAGTTATCGCTATCAAGCCATTACTCAGCCCACTAGCAGTAGTTCATCCCAATTATTAGCCCAGGTCGAAGCGT
ACAAGTTGCCGTTAGTGATCAGCTTATCGGGAATAATGCTATTCAGCATTGGCGGTATGTGGTGGATGAGACGCAAATAA

Protein sequence : 
MKYFKWSILLLVFALTGCKVDLYRDLPQDEANQMVALLMLNHIDASAEADQKSGNVSLKIEKDQFINAVELLRQNGFPKP
HYANIEDLFPSGQLVTSPAQEEAKMGYLKEQQLERTLSSMDGVISARVSIAEPAPDTGRQLAQTKSASVYIKYSPQANLT
NTENQIKSLVQNAVPGLSYDNISVFLQAASYRYQAITQPTSSSSSQLLAQVEAYKLPLVISLSGIMLFSIGGMWWMRRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0263 YP_002345344.1 type III secretion system apparatus lipoprotein Virulence Not named Protein 1e-50 54
ssaJ CAA12196.1 SsaJ Virulence SPI-2 Protein 9e-44 51
ssaJ NP_460374.1 needle complex inner membrane lipoprotein Virulence SPI-2 Protein 2e-43 51
ssaJ NP_456119.1 putative pathogenicity island lipoprotein Virulence SPI-2 Protein 1e-43 51
ssaJ NP_805080.1 pathogenicity island lipoprotein Virulence SPI-2 Protein 1e-43 51
ssaJ CAA70532.1 secretion system apparatus Virulence SPI-2 Protein 1e-43 51
ssaJ YP_216417.1 secretion system apparatus protein SsaJ Virulence SPI-2 Protein 2e-43 51
escJ AAC31518.1 L0039 Virulence LEE Protein 4e-35 46
escJ ACU09463.1 EscJ protein Virulence LEE Protein 4e-35 46
escJ AAK26710.1 EscJ Virulence LEE Protein 9e-36 46
escJ YP_003236093.1 T3SS structure protein EscJ Virulence LEE Protein 5e-35 46
escJ AAL57537.1 EscJ Virulence LEE Protein 9e-36 46
escJ NP_290273.1 hypothetical protein Virulence LEE Protein 5e-35 46
escJ CAC81857.1 EscJ protein Virulence LEE II Protein 9e-36 46
ECs4573 NP_312600.1 EscJ Virulence LEE Protein 5e-35 46
escJ CAI43879.1 EscJ protein Virulence LEE Protein 9e-36 46
escJ YP_003223480.1 T3SS structure protein EscJ Virulence LEE Protein 1e-35 46
unnamed AAL06364.1 EscJ Virulence LEE Protein 4e-35 46
escJ YP_003232148.1 T3SS structure protein EscJ Virulence LEE Protein 1e-35 46
escJ AAC38379.1 EscJ Virulence LEE Protein 4e-35 46
escJ AFO66320.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-33 42
escJ AFO66410.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-33 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Sbal_1962 YP_001050335.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0510 Protein 7e-44 51
Sbal_1962 YP_001050335.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0725 Protein 2e-35 46
Sbal_1962 YP_001050335.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0817 Protein 2e-35 46
Sbal_1962 YP_001050335.1 YscJ/HrcJ family type III secretion apparatus lipoprotein VFG0218 Protein 3e-31 41