|
Name : Sbal_1946 (Sbal_1946) Accession : YP_001050319.1 Strain : Shewanella baltica OS155 Genome accession: NC_009052 Putative virulence/resistance : Virulence Product : YscC/HrcC family type III secretion outer membrane protein Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 2261794 - 2263269 bp Length : 1476 bp Strand : + Note : TIGRFAM: type III secretion outer membrane pore, YscC/HrcC family; PFAM: type II and III secretion system protein; NolW domain protein; KEGG: ypn:YPN_3412 type III secretion protein DNA sequence : ATGAAAAAACTACTCAGTTTACTGTTACTGTGTCAGATGGGCCTAGCTCAGGCTGCACCACTGACAAACATTAAATGGCA AGGTGAGCCCTTTGTCATGATCAGTCGAGGTACAGCGCTAACCTCAGTCATTCAGGACTTTGCCAGTAATTATGGCGTAC CAGTCATTGTTAGTAATAAGGTCAACGACAACTATATTGGCCAAATACAACAGCAAGATCCTCAATCCGTTATCCAAGAT CTCACCCGTCGCTTTGGTTTAGTCTGGTACTACAACAACGACGTCTTATATGTTTACAAAGCCAGTGAAATTAATAGTGA AGTGCTACCGCTAACCAGCTTATCCGCGGCTAAGGTCGATCACTACCTGCGCAGTGCAGGAGTACTCGATAAGGGGGTCT GTAGCATTAAATCTATGGCAGGGATCAGTGGCTTACAAGTCACAGGTGTACCCGAATGCATTAACAGCGTCACCAAACTC ACGGCACAACTCGATGCCAATGCTAAACAAACCACAGAAAACCAAGAAACGGTTAAAGTCTATCCACTGAAATACGCATC TGCAACCGACTCGGTTTATCAATATCGTAGCCAACCTGTGAGTATTCCAGGATTAGTTACAGTGCTAAAAGAAATGGATC AAGGTACACAAGTCGCCAATGCCGTGGCGGGTTCTGTGAGTAATATAAGCGGTCCAGTCTTTGCCGCCGATCCTCGCCAA AACGCCATCATAGTCCGTGGCAGTGCCCGTGATATGGCCACTTATGGCTCTTTGATAAGACAACTCGACACTAAGCCCAC CATGATTGAAGTGTCTGTATCGATATTCGATGTGGACGCCTCTGACTTTAAACAGCTAGGCATAGATTGGTCGGCGTCAG CCAAATTAGGCGGTGGTTCAGTGAGCTTCAACAGTGGTGATAGCAGTGACAATTTTTCCACCGTCATAGGTAACACTGGC AACTTCATGCTGCGCCTCAATGCACTAGAGAAGAACTCTAAGGCCAAAGTACTCTCACGTCCCTCAGTAGTGACGTTAAA CAATGTGCAAGCCGTACTCGATAAAAATGTGACATTTTACACTAAGTTAGAAGGAGATAAAGTCGCTAAATTAGAATCAG TGACCACAGGTTCTCTATTACGAGTCACACCAAGATTAATTGATGAAGTGGGCCATCAGGCTGTGATGCTGGATCTCAAT ATTCAGGATGGTCAACAGAGCCAAGCAGTGAGCCGCAGTGAACCATTACCACAAGTACAAAACTCCGAGATCTCGACCCA GGCGACGCTGAAATCGGGAGAGAGTCTGTTACTCGGCGGCTTCGTACAAGATAGAGATGAAACGACCCAGAACAAGATCC CACTACTGGGCGATCTACCACTGCTGGGCGGTTTGTTTAGAAGTACAGATCACCACACTCAAAGCGTGATGCGTCTGTTC CTGATCAAAGCGGAACCCGTTAACCAAGGAGATTAA Protein sequence : MKKLLSLLLLCQMGLAQAAPLTNIKWQGEPFVMISRGTALTSVIQDFASNYGVPVIVSNKVNDNYIGQIQQQDPQSVIQD LTRRFGLVWYYNNDVLYVYKASEINSEVLPLTSLSAAKVDHYLRSAGVLDKGVCSIKSMAGISGLQVTGVPECINSVTKL TAQLDANAKQTTENQETVKVYPLKYASATDSVYQYRSQPVSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQ NAIIVRGSARDMATYGSLIRQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSGDSSDNFSTVIGNTG NFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKLEGDKVAKLESVTTGSLLRVTPRLIDEVGHQAVMLDLN IQDGQQSQAVSRSEPLPQVQNSEISTQATLKSGESLLLGGFVQDRDETTQNKIPLLGDLPLLGGLFRSTDHHTQSVMRLF LIKAEPVNQGD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0257 | YP_002345337.1 | type III secretion protein | Virulence | Not named | Protein | 2e-118 | 55 |
| spiA | NP_805065.1 | outer membrane secretory protein | Virulence | SPI-2 | Protein | 1e-101 | 49 |
| spiA | AAC44301.1 | SpiA | Virulence | SPI-2 | Protein | 1e-101 | 49 |
| ssaC | NP_460359.1 | outer membrane secretin precursor | Virulence | SPI-2 | Protein | 1e-101 | 49 |
| ssaC | YP_216402.1 | secretion system apparatus protein SsaC | Virulence | SPI-2 | Protein | 1e-101 | 49 |
| spiA | NP_456134.1 | putative outer membrane secretory protein | Virulence | SPI-2 | Protein | 1e-101 | 49 |
| escC | AFO66299.1 | putative type III complex subunit | Virulence | SESS LEE | Protein | 2e-100 | 46 |
| escC | AFO66408.1 | putative type III complex subunit | Virulence | SESS LEE | Protein | 2e-100 | 46 |
| escC | CAI43881.1 | EscC protein | Virulence | LEE | Protein | 2e-99 | 45 |
| escC | YP_003223482.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 3e-99 | 45 |
| escC | YP_003232146.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 3e-99 | 45 |
| escC | AAK26708.1 | EscC | Virulence | LEE | Protein | 2e-99 | 45 |
| escC | AAL57535.1 | EscC | Virulence | LEE | Protein | 2e-99 | 45 |
| escC | CAC81855.1 | EscC protein | Virulence | LEE II | Protein | 2e-99 | 45 |
| unnamed | AAL06362.1 | EscC | Virulence | LEE | Protein | 1e-99 | 44 |
| escC | YP_003236095.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 3e-98 | 44 |
| escC | NP_290275.1 | hypothetical protein | Virulence | LEE | Protein | 1e-98 | 44 |
| escC | AAC38377.1 | EscC | Virulence | LEE | Protein | 5e-98 | 44 |
| ECs4575 | NP_312602.1 | EscC | Virulence | LEE | Protein | 1e-98 | 44 |
| escC | AAC31520.1 | L0041 | Virulence | LEE | Protein | 9e-99 | 44 |
| escC | ACU09465.1 | type III secretion outer membrane pore YscC/HrcC family | Virulence | LEE | Protein | 9e-99 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Sbal_1946 | YP_001050319.1 | YscC/HrcC family type III secretion outer membrane protein | VFG0495 | Protein | 6e-102 | 49 |
| Sbal_1946 | YP_001050319.1 | YscC/HrcC family type III secretion outer membrane protein | VFG0819 | Protein | 5e-99 | 44 |
| Sbal_1946 | YP_001050319.1 | YscC/HrcC family type III secretion outer membrane protein | VFG0723 | Protein | 3e-98 | 44 |
