Gene Information

Name : Memar_0700 (Memar_0700)
Accession : YP_001046615.1
Strain : Methanoculleus marisnigri JR1
Genome accession: NC_009051
Putative virulence/resistance : Virulence
Product : NAD-dependent epimerase/dehydratase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0451
EC number : -
Position : 680989 - 681918 bp
Length : 930 bp
Strand : -
Note : PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mba:Mbar_A0021 UDP-glucose 4-epimerase

DNA sequence :
ATGCGTTACATTGTCACAGGTGGAGCGGGGTTCATCGGGTCCAACCTCACGGCGACACTGGCACGCGACCACGAGGTCGT
AATCATCGACAACCTCGCCACCGGTCACCAGGAAAACATCGAGCACCTCCTCGGTCACCCCCGGGTGACGTTCGTCGAGG
GGAGCATCACCGATCTCGACCTTCTCGCGGAAACCTTCCCCGGCGCGGACGGTGTCTTCCACCAGGCGGCCATCCCGTCC
GTGCCCCGGTCGGTGAAGGATCCGCTCGCCTCGAACGAGGCGAACGTGACCGGCACGCTCGACGTGCTCGTGGCGGCGAA
GGACTGCGGAGTGCCGGCCGTGGTTGCCGCCTCCTCCTCCTCGGTCTACGGCGACACCCCGGCCCTCCCGAAGCACGAGG
GCATGGTCCCGAACCCGCTCTCCCCCTATGCGGTCACGAAACTGGCGGACGAGTGCTACGGGAAGGTCTTCTCGGATCTC
TACGGCATCCGCACCGTCTCCCTCCGCTACTTCAATGTCTTCGGCCCACGGCAGGACCCCAAATCCGAGTATGCAGCGGT
GATCCCGAAGTTCATTACCCGGCTGCTTGCCGGCGAACCGCCGGTCATCTACGGCGACGGGGAGCAGACCCGCGACTTCA
CCTTCGTCGCCGACGTGGTGCAGGCGAACATCAGAGCGATGGAGAGCGACGCCAGAGGGGTCTTTAACATCGCAGGCGGC
CGCCGGATCAGTTTGAACCAGCTTGCGTCCATCCTCATGGAGATCACAGGCACGCGGTGCGACCCGATCTACGAGGCCCC
CCGTGCCGGGGATATCCGGGACTCGCTCGCTGACATCAGCCGCGCCCGGAAGGCGTTCGGGTACGACCCGCAGTATTCCG
TCGAGGAGGGGCTCTTTCAGGCAGTGGCGTGGTTCCGGGAGCGAGTTTGA

Protein sequence :
MRYIVTGGAGFIGSNLTATLARDHEVVIIDNLATGHQENIEHLLGHPRVTFVEGSITDLDLLAETFPGADGVFHQAAIPS
VPRSVKDPLASNEANVTGTLDVLVAAKDCGVPAVVAASSSSVYGDTPALPKHEGMVPNPLSPYAVTKLADECYGKVFSDL
YGIRTVSLRYFNVFGPRQDPKSEYAAVIPKFITRLLAGEPPVIYGDGEQTRDFTFVADVVQANIRAMESDARGVFNIAGG
RRISLNQLASILMEITGTRCDPIYEAPRAGDIRDSLADISRARKAFGYDPQYSVEEGLFQAVAWFRERV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 8e-52 41
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 8e-52 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Memar_0700 YP_001046615.1 NAD-dependent epimerase/dehydratase VFG0430 Protein 3e-52 41