Gene Information

Name : Rsph17029_3058 (Rsph17029_3058)
Accession : YP_001044930.1
Strain :
Genome accession: NC_009050
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1120
EC number : -
Position : 69424 - 70224 bp
Length : 801 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3413 ABC Fe+3-siderophore transporter, ATPase subunit

DNA sequence :
ATGACCGACAATGCGCTGGTGGTCAGCGAGCTTGCCGCGGGCTACGGCGACCGGCGGGTGCTGCGCGGGCTCGATCTCGC
GGTGGCGCCCGGCCGGATCACCGCCATCGTGGGCGCGAATGCCTGCGGCAAGTCCACGCTCCTGCGGACGCTCTCGCGGC
TCCTTTCGCCCGCTGAGGGGCAGGTGCTGCTCGACGGCCGCTCGGTCCATCGCATCCCCCCGCGCGAGCTTGCCCGCCGG
ATGGGGCTCCTGCCGCAGTCGCCGCTGGCGCCCGACGGCATCACCGTGCTCGATCTGGTGAGCCGCGGCCGCCACCCGCA
TCAGGGGCTCTTCTCGCGCTGGAGCGCCGCCGACGATGCGGCGGTGGCCGCCGCGCTCGAGGCGACGGGCACCATGGATC
TGGCCGAGCGCGCGGTGGACGAGCTGTCGGGCGGGCAGCGCCAGCGGGTCTGGATCGCCGTAGCGCTGGCGCAGGAGACC
GGGATCCTGCTCCTCGACGAGCCCACCACCTTCCTCGACATCGCCCATCAGGTCGAGGTGCTCGACCTGCTCACCGATCT
GAACCGCGCGCAGGGGACCACCATCGTCATGGTGCTGCACGACCTGAACCTCGCCGCCCGCTATGCCGACGCGCTGGTGG
CGATGGCCGGGGGCCGCATCCATGCGAGCGGTCCTCCCGAGAGGGTCCTGACCGAAGAGATGGTGCAGGCGGTCTTCGGG
CTGCCCTGCCGGACGCTCACCGATCCGGTGAGCGGCCGGCCCATGATGCTGCCGATCGGCCGCCACCGCGCCCGCGGCTG
A

Protein sequence :
MTDNALVVSELAAGYGDRRVLRGLDLAVAPGRITAIVGANACGKSTLLRTLSRLLSPAEGQVLLDGRSVHRIPPRELARR
MGLLPQSPLAPDGITVLDLVSRGRHPHQGLFSRWSAADDAAVAAALEATGTMDLAERAVDELSGGQRQRVWIAVALAQET
GILLLDEPTTFLDIAHQVEVLDLLTDLNRAQGTTIVMVLHDLNLAARYADALVAMAGGRIHASGPPERVLTEEMVQAVFG
LPCRTLTDPVSGRPMMLPIGRHRARG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
iusE YP_005143742.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-55 53
fecE AAL08451.1 ATP-binding protein FecE Virulence SRL Protein 6e-49 50
SPN23F_09560 YP_002510939.1 ferric siderophore ABC transporter ATP-binding protein Virulence PPI-1 Protein 2e-59 49
SP_1035 NP_345510.1 iron-compound ABC transporter ATP-binding protein Not tested PPI-1 Protein 2e-59 49
DIP0585 NP_938961.1 iron ABC transporter ATP-binding protein Virulence Not named Protein 3e-49 48
fagC YP_005680307.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-46 45
fagC YP_003782430.1 ABC transporter ATP-binding protein Not tested PiCp 1 Protein 2e-46 45
fagC YP_005682397.1 ATP binding cytoplasmic membrane protein Virulence PiCp 1 Protein 2e-46 44
fagC YP_005684488.1 ATP binding cytoplasmic membrane protein Not tested PiCp 1 Protein 2e-46 44
ciuD YP_005683346.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-46 42
ciuD YP_003783391.1 iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-46 42
ciuD YP_005685432.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-46 42
ciuD YP_005681255.1 Iron ABC transporter ATP-binding protein Virulence PiCp 4 Protein 6e-46 42
CDCE8392_1767 YP_005134301.1 iron complex transport system ATP-binding protein Virulence Not named Protein 3e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_3058 YP_001044930.1 ABC transporter BAC0164 Protein 4e-49 50

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_3058 YP_001044930.1 ABC transporter VFG0925 Protein 2e-61 53
Rsph17029_3058 YP_001044930.1 ABC transporter VFG1042 Protein 3e-49 50