Gene Information

Name : Rsph17029_3573 (Rsph17029_3573)
Accession : YP_001045436.1
Strain :
Genome accession: NC_009050
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter, DctM subunit
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 663161 - 664459 bp
Length : 1299 bp
Strand : +
Note : TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_3212 TRAP dicarboxylate transporter-DctM subunit

DNA sequence : 
ATGCTTCCGGTCTTTCTCACCTTTTCGGCTCTGACCCTCATCACCTGCGGCCTGATGATCGGCGTGGCGGCCGCTCTCGT
CTCGATCATCGGGGGGATGGCGCTGTTCGGCGATCCCTTCGGCGCCCGCGTGCCGATGATGATCAGCCGCTTCGCCATCG
ACCGGATCGACAATTTCCTGCTGCTGGCCGTGCCCTTCTTCATCCTTGCGGGTCGTCTGATGAACACCGGCGGGGTCACG
GTGCGGCTCTTCGATTTCGTCGCGGTGCTGGTGCAGCCGCTGCGGGGCGGGCTTGGCTATGCCAACGTGATGGCAAGCTT
CGTCTTTGCGGGCATGTCGGGATCGGCGACCGCCGACGTCGTGGGCCTCGGATCGATCGAGATGAAGGCCATGCGCTCGA
ACGGCTATCCCGAGGGCTTCAGCGCCGGCGTCACTGCGGCGTCGTCCTTGCTCGGGCCGGTCATCCCGCCGTCCATCGTG
CTCATCGCCTATGCCGTGCAGGCAGAGCAGTCGGTCGCCACGCTGTTCCTCGCCGCCATCGTTCCCGGCATCCTGCTGGC
CGCCTGCTTCATGGTCTGGGTGGCCCTCGAGTCCCGGCGCCTGAAGCTGCCGGCTGGCAGCTGGCCCTCGGGGCGCGAGG
TCAGGATCAAGGCCCTGCATGCGATCCTGCCGCTCCTGACGCCGGGCATCATCCTCGCCGGCATCTACGGCGGGATCTTC
ACCCCGACCGAGGCCGCGGCGGTGGCCGTGCTCTATGCCCTGCTGCTCACCACCTTCGTCTATCGCGAGATGAACTGGAG
GACATTTCTGGCCGAGCTGAAGGGCACCGCGCTCGACACGGCGACCCTGATGTTCATCATCGCGATGACCTCTGCCTTCG
GCGTCATCATGCTGCGTCTGGGCCTGCCTCAGGCCATGGTGGGCATCGTCGTGGGCATCTCCGAGAACCCGACCATCGTC
ATGTTTCTGATGCTGGTGGTGTGGCTGCTCGTCGGCTGCTTCATGGCGCAGACACCGGCGATCATCATCCTGACCCCGAT
CCTCATGCCCATCGCGGACCGCTTCGGCTTCGACATGATCCACTTCGGCATCGTCATGGCGATGGCGCTGACCATCGGTC
TTCTGACCCCGCCGGTGGGCATGGTGCTCTATGCCCTGCGCAAGGTTGCCGATGTGCCTCTGGCGATCCTGTTCCGGGTG
GTGATGCCCTACATCGTCATCGCCATCCTGTTCATTTCGCTTCTCATTCTCGTTCCCCAGCTGGTGACGGCCCTGCCGTA
TGCCTTCGGGATGCACTGA

Protein sequence : 
MLPVFLTFSALTLITCGLMIGVAAALVSIIGGMALFGDPFGARVPMMISRFAIDRIDNFLLLAVPFFILAGRLMNTGGVT
VRLFDFVAVLVQPLRGGLGYANVMASFVFAGMSGSATADVVGLGSIEMKAMRSNGYPEGFSAGVTAASSLLGPVIPPSIV
LIAYAVQAEQSVATLFLAAIVPGILLAACFMVWVALESRRLKLPAGSWPSGREVRIKALHAILPLLTPGIILAGIYGGIF
TPTEAAAVAVLYALLLTTFVYREMNWRTFLAELKGTALDTATLMFIIAMTSAFGVIMLRLGLPQAMVGIVVGISENPTIV
MFLMLVVWLLVGCFMAQTPAIIILTPILMPIADRFGFDMIHFGIVMAMALTIGLLTPPVGMVLYALRKVADVPLAILFRV
VMPYIVIAILFISLLILVPQLVTALPYAFGMH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 7e-54 43
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 5e-54 43
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 7e-54 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_3573 YP_001045436.1 TRAP dicarboxylate transporter, DctM subunit VFG1110 Protein 3e-54 43