Gene Information

Name : Rsph17029_3561 (Rsph17029_3561)
Accession : YP_001045424.1
Strain :
Genome accession: NC_009050
Putative virulence/resistance : Resistance
Product : hexapaptide repeat-containing transferase
Function : -
COG functional category : R : General function prediction only
COG ID : COG0110
EC number : -
Position : 650748 - 651383 bp
Length : 636 bp
Strand : -
Note : KEGG: pde:Pden_0116 transferase hexapeptide repeat containing protein

DNA sequence : 
ATGCAGAACCACTTCGACAGCCCCTTTCGGGGCGTGACCCTCGACAAGCAGGTCACGAACCCGAACATCCTCGTCGGGCG
CCACAGCTATTACTCGGGCTATTACCACGGCCACGGTTTCGACGACTGCGCCCGCTATCTCCTGCCGGACGCGGGCGTGG
ATCGGCTTGTGATCGGCAGCTTCTGCTCCATCGGATCGGGGGCCGCCTTCATCATGGCCGGCAATCAGGGCCACCGGGCG
GACTGGATCAGCACCTTCCCCTTCTTCTGGATGCCGGAGGTGCCGGCCTTCGCGGAGGCGCGAAACGGCTATCAACCCGC
CGGAGACACGATCATCGGCAACGACGTCTGGATCGGCTCGGAGGCGGTCATCCTGCCCGGGGTGACGGTCGGCGATGGCG
CAATCGTTGGCACCCGCGCCGTCGTCACGCGCGACGTCCCGCCCTATGCCATCGTCGCAGGCAATCCGGCGCGGGTGATC
CGCCACAGGTTCGAGGAGGAGGACATCCGGCTCCTCCTCGACATGCGCTGGTGGGACTGGCCGGAGGAGGCGCTGCGCGC
GGCCATGAGCCTGATGACGGCCGGGGATGTGCGGCGGCTTCATGCCTATTGGGCGCGCAATATCCGGTCGCGGTGA

Protein sequence : 
MQNHFDSPFRGVTLDKQVTNPNILVGRHSYYSGYYHGHGFDDCARYLLPDAGVDRLVIGSFCSIGSGAAFIMAGNQGHRA
DWISTFPFFWMPEVPAFAEARNGYQPAGDTIIGNDVWIGSEAVILPGVTVGDGAIVGTRAVVTRDVPPYAIVAGNPARVI
RHRFEEEDIRLLLDMRWWDWPEEALRAAMSLMTAGDVRRLHAYWARNIRSR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
catB8 YP_005797132.1 chloramphenicol acetyltransferase Not tested AbaR4e Protein 1e-60 64
catB3 AET25385.1 chloramphenicol acetyltransferase Not tested PAGI-2(C) Protein 4e-60 64
catB3 AFG30108.1 chloramphenicol acetyltransferase Not tested PAGI-2 Protein 4e-60 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_3561 YP_001045424.1 hexapaptide repeat-containing transferase NC_002516.2.878374.p Protein 5e-59 69
Rsph17029_3561 YP_001045424.1 hexapaptide repeat-containing transferase AY740681.1.gene5.p01 Protein 2e-60 64
Rsph17029_3561 YP_001045424.1 hexapaptide repeat-containing transferase AF322577.2.gene4.p01 Protein 2e-60 64
Rsph17029_3561 YP_001045424.1 hexapaptide repeat-containing transferase AY123251.gene2.p01 Protein 3e-61 64
Rsph17029_3561 YP_001045424.1 hexapaptide repeat-containing transferase JF268688.1.gene6.p01 Protein 3e-57 59
Rsph17029_3561 YP_001045424.1 hexapaptide repeat-containing transferase AM180355.1.gene2499. Protein 2e-33 45
Rsph17029_3561 YP_001045424.1 hexapaptide repeat-containing transferase NC_011595.7057349.p0 Protein 1e-27 44
Rsph17029_3561 YP_001045424.1 hexapaptide repeat-containing transferase NC_010410.6000796.p0 Protein 1e-27 44
Rsph17029_3561 YP_001045424.1 hexapaptide repeat-containing transferase NC_011586.7045146.p0 Protein 5e-28 44
Rsph17029_3561 YP_001045424.1 hexapaptide repeat-containing transferase CP001581.1.gene990.p Protein 4e-38 43