Gene Information

Name : Rsph17029_3020 (Rsph17029_3020)
Accession : YP_001044892.1
Strain :
Genome accession: NC_009050
Putative virulence/resistance : Resistance
Product : ABC transporter
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 28932 - 29633 bp
Length : 702 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3374 ABC efflux transporter, ATPase subunit

DNA sequence : 
TTGACCGAGGGGCCGCTCATCGCGCTTCAGGGGATCGGCCGGTCCTATGGCGCGGGCGCGGCCGAGGTGCGCGCGCTCGA
CGGGGTGGATCTCACCATCCGGCGCGGCGAGTTCGTGGCGATCATGGGCCCCTCGGGGTCGGGCAAGTCGACGGCGATGA
ACATCATCGGCTGCCTCGACCGGCCCACCTCGGGGCGCTACCTCTTCGAGGGGACCGACGTCTCGGGGCTCGACCGCGAC
GGGCGGGCGCTGCTGCGGCGGCACTTTCTGGGCTTCGTCTTTCAGGGCTTCAACCTCCTGGCCCGCACCACTGCGCTCGA
GAATGTCGAGCTGCCGCTGATCTACAAGGGCCTGCCGCGGGCCGAGCGGATCGAGAAGGCGCAGCGGGCGCTGGCGCGGG
TGGGGCTGGCGGGGCGCGAGCATCACGATCCCTCGCAGCTCTCGGGCGGCCAGCAGCAGCGGGTGGCCATCGCCCGGGCG
CTGGCGGGCGAGCCCGCGGTGATCCTCGCCGACGAGCCCACGGGCAACCTCGACAGCCAGCGGTCGCATGAGATCATGCA
GCTGATGCAGGCGCTGAACCGCGAAGGGATCACCATCGTCATGGTCACCCACGAAGAGGATATCGCGGCCTATGCCGGGC
GGCTCGTCGTCTTCACCGACGGCCACCTCACGCGGGACGAGCCGGTGAAAGCGAGGGCCTGA

Protein sequence : 
MTEGPLIALQGIGRSYGAGAAEVRALDGVDLTIRRGEFVAIMGPSGSGKSTAMNIIGCLDRPTSGRYLFEGTDVSGLDRD
GRALLRRHFLGFVFQGFNLLARTTALENVELPLIYKGLPRAERIEKAQRALARVGLAGREHHDPSQLSGGQQQRVAIARA
LAGEPAVILADEPTGNLDSQRSHEIMQLMQALNREGITIVMVTHEEDIAAYAGRLVVFTDGHLTRDEPVKARA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-30 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-30 43
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 3e-29 42
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-29 41
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 3e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_3020 YP_001044892.1 ABC transporter NC_012469.1.7686878. Protein 3e-53 56
Rsph17029_3020 YP_001044892.1 ABC transporter NC_008702.1.4606598. Protein 1e-42 51
Rsph17029_3020 YP_001044892.1 ABC transporter CP001581.1.gene798.p Protein 2e-35 46
Rsph17029_3020 YP_001044892.1 ABC transporter CP001581.1.gene598.p Protein 3e-33 43