|
Name : Rsph17029_0923 (Rsph17029_0923) Accession : YP_001042806.1 Strain : Genome accession: NC_009049 Putative virulence/resistance : Resistance Product : major facilitator superfamily transporter Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG2814 EC number : - Position : 948819 - 950039 bp Length : 1221 bp Strand : - Note : PFAM: major facilitator superfamily MFS_1; KEGG: rsp:RSP_2249 multidrug (tetracycline) efflux pump, major facilitator superfamily (MFS) DNA sequence : ATGCAACAGCCCCGGCTCGCCCTTGCCTTCATCCTGATCACCGTGGCGCTCGACGCGATCGGGATCGGGCTGATCTTTCC CGTGATGCCCGACCTCATCCTCGAGATCACGGGCCAGCCGCTGTCCGAGGCGGCGGTCTGGGGCGGCCTTCTGTCGGCCT CCTTCGCCGTGATGCAGTTCCTGTTCGGCCCGACCATCGGCAGCCTCTCCGACCGGTTCGGCCGGCGGCCGATCCTGCTC GGCTCGCTCGTCCTCATGTCGGGCACCTATCTCGCCATGGCGCTCGCCCCCACGATGGCGATCCTGCTCGCAGCGAGGAT CGTGGCGGGCATCGTCTCGGCCACCTATGCCACCGCCTCGGCCTTCATCGCCGACGTGACCCCGCCCGAGGACCGCGGCA AGCGCTTCGCCCTCGTGGGCGCAGGCTTCGGGATCGGCTTCGTGCTGGGGCCGGCGCTGGGTGGCCTTCTGGCGGGGCTC GACACGCGCGCGCCCTTCTATGCGGCGGCGCTGATGGCGCTGCTCAACCTCGGGCTCGGAAGCCTGATCCTGCCCGAGAC GGTGACGGACGCCACCCGCCGCGCCTTCACGCTCTCGCGCGCGAACCCTCTGGGCGCCCTCCGCGCGGTCGCCCGCTTGC CGGGCCTCAGCCGCCCGCTCGCCGTGTTCCTGATCCTCGGGATCGCCATGAACGTCTATCCGGCGGTCTGGGCCTTCTAT GGACAGGCGCAGTTCGGCTGGGGCGCGGGCATGGTCGGGGCGTCCCTCGCGCTCTACGGCATCAGCTTTGCGGTGGGACA GGTGGCGCTGGTGGGGCCGGCGATCCGGCACCTCGGCGAGCACCGCACGGCGCTGGTAGGGATCTGGGTCGACATCGTCA CCCTGGCGATTCTGGGCGTCCTTGCATCCGGCACGGGGGTGCTCTTTCTCATCCCGGTGACGGCGCTCGGCGGCGTGGTG GTGCCCGCGCTCCAGTCCATCCTGTCGCGCGCCACTCCGGCGGATGCGCAGGGCGAGCTGCAGGGCGTGCTGGCCTCGCT GAACGCCATCGCCATGATCGCCTCGCCGCTGGTCATGACCGCGACCTTCCGCGCCTTCACCGCGCCGGGCGCGCCGCTGC ACCTGCCCGGCGCGCCGTTCCTGCTCGCCTCGCTGCTGATGGTGGGCGCACTGGCGCTGCACGTCCGGGGCGCGGGACAG CCGGAGAGGGACACGGCCTGA Protein sequence : MQQPRLALAFILITVALDAIGIGLIFPVMPDLILEITGQPLSEAAVWGGLLSASFAVMQFLFGPTIGSLSDRFGRRPILL GSLVLMSGTYLAMALAPTMAILLAARIVAGIVSATYATASAFIADVTPPEDRGKRFALVGAGFGIGFVLGPALGGLLAGL DTRAPFYAAALMALLNLGLGSLILPETVTDATRRAFTLSRANPLGALRAVARLPGLSRPLAVFLILGIAMNVYPAVWAFY GQAQFGWGAGMVGASLALYGISFAVGQVALVGPAIRHLGEHRTALVGIWVDIVTLAILGVLASGTGVLFLIPVTALGGVV VPALQSILSRATPADAQGELQGVLASLNAIAMIASPLVMTATFRAFTAPGAPLHLPGAPFLLASLLMVGALALHVRGAGQ PERDTA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 9e-39 | 41 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 7e-39 | 41 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 7e-39 | 41 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 7e-39 | 41 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 9e-39 | 41 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 7e-39 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Rsph17029_0923 | YP_001042806.1 | major facilitator superfamily transporter | AY264780.2.gene3.p01 | Protein | 6e-52 | 45 |
| Rsph17029_0923 | YP_001042806.1 | major facilitator superfamily transporter | AF090987.gene.p01 | Protein | 5e-42 | 43 |
| Rsph17029_0923 | YP_001042806.1 | major facilitator superfamily transporter | Y19114.gene.p01 | Protein | 7e-46 | 42 |
| Rsph17029_0923 | YP_001042806.1 | major facilitator superfamily transporter | X75761.gene.p01 | Protein | 3e-39 | 41 |
| Rsph17029_0923 | YP_001042806.1 | major facilitator superfamily transporter | CP001485.1.gene2821. | Protein | 4e-39 | 41 |
| Rsph17029_0923 | YP_001042806.1 | major facilitator superfamily transporter | AF534183.gene.p01 | Protein | 4e-39 | 41 |
| Rsph17029_0923 | YP_001042806.1 | major facilitator superfamily transporter | NC_010410.6002597.p0 | Protein | 4e-39 | 41 |
