Gene Information

Name : Rsph17029_2566 (Rsph17029_2566)
Accession : YP_001044440.1
Strain :
Genome accession: NC_009049
Putative virulence/resistance : Virulence
Product : ABC-3 protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2703177 - 2704025 bp
Length : 849 bp
Strand : +
Note : PFAM: ABC-3 protein; KEGG: rsp:RSP_0908 ABC Mn+2/Fe+2 transporter, inner membrane subunit SitD

DNA sequence : 
ATGACCGAGACGCTTCTCTTCCCGTTCCAGTTTCCCTTCATGCAGAACGCCTTTCTCGTCTGCCTGCTGGTGGCGGTGCC
GACGGCGCTTCTCTCCTGCCTTCTGGTCCTGAAGGGCTGGGCGCTGATGGGAGACGCCATCAGCCATGCCATCCTGCCGG
GCGTGGTGCTGGCCTATATCGCGGGCGTGCCGCTGCTGGTGGGCGCCTTCGGCGCGGGCATGGCCTGCGCGCTGGCCACC
GGGTTCCTCGCGGGCAACAGCCGGGTCAAGCAGGACACGGTGATGGGCGTGGTCTTCGCCGGCATGTTCGGGCTGGGGCT
GCTGCTCTACACCTCCATCGAGACGGACGTGCATCTCGACCATATCCTCTTCGGCAACATGCTGGGCGTGGGACCCGAGG
ATCTTCTGGTCTCGGGGGCGATCTCGGCGGGCGTGACGGGGGCGCTCCTGCTCACCTGGAAGGATCTCCTCCTCCATGCG
TTCGATCCGGCGCAGGCGCGGGCCTCGGGCCTCCGGGTGGGGCTGCTGCATTACGGCCTTCTGACCGCGCTCGCGCTGAC
CATCGTGGCCACGCTGACCGCCACCGGCCTCATCCTCGCCGTGGGCCTGCTGATCGCGCCGGGGGCCATCGCCTTCCTGA
CGGTGCGGCGCTTCGGGCCGATGCTGATCGTGGCGGTGGCGGTCTGCCTTGCCGCGATGCTGGCCGGCACCTATGCGAGC
TTCTTCCTCGACAGCGCCCCCGCCCCCACCATCATCCTGATCCTGAGCGGGATCTTCGTGCTGGCCTTCCTCGCCCGGCT
GCGGCGCAATCGGCGCGCAGCGCTCAGCGCGGCAGCCCCGCCTCGCTGA

Protein sequence : 
MTETLLFPFQFPFMQNAFLVCLLVAVPTALLSCLLVLKGWALMGDAISHAILPGVVLAYIAGVPLLVGAFGAGMACALAT
GFLAGNSRVKQDTVMGVVFAGMFGLGLLLYTSIETDVHLDHILFGNMLGVGPEDLLVSGAISAGVTGALLLTWKDLLLHA
FDPAQARASGLRVGLLHYGLLTALALTIVATLTATGLILAVGLLIAPGAIAFLTVRRFGPMLIVAVAVCLAAMLAGTYAS
FFLDSAPAPTIILILSGIFVLAFLARLRRNRRAALSAAAPPR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-53 63
sitD NP_461785.1 permease Virulence SPI-1 Protein 1e-53 63
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 9e-54 63
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 9e-54 63
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 8e-54 63

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_2566 YP_001044440.1 ABC-3 protein BAC0352 Protein 5e-54 63
Rsph17029_2566 YP_001044440.1 ABC-3 protein BAC0442 Protein 2e-42 55

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_2566 YP_001044440.1 ABC-3 protein VFG0528 Protein 4e-54 63