Gene Information

Name : Rsph17029_2564 (Rsph17029_2564)
Accession : YP_001044438.1
Strain :
Genome accession: NC_009049
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 2701440 - 2702333 bp
Length : 894 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_0905 ABC Mn+2/Fe+2 transporter, ATPase subunit SitB

DNA sequence : 
ATGAGACCGGAGATCCCCTCGGCCGGGGCGGAGGCGGACGCGGGCATCTCGGTCCGCGACGTGACGGTGACCTACCGCAA
CGGCCATACGGCGCTGCGCCATGCGAGCTTCTCGCTGCCGCGCGGGACGGTGGCCGCGCTCGTGGGCGTCAACGGGGCGG
GCAAGTCCACGCTCTTCAAGGCGGTCATGGGCCTCGTGCCGGTGGGCTCGGGCGAGATCCGGCTGCTCGGTCGCACGGTG
CCCGAGGCACTGCGGCAGAATCTCGTCGCCTATGTGCCGCAATCCGAGGAGGTGGACTGGACCTTCCCGGTCCTCGTCGA
GGATGTGGTGATGATGGGCCGCTACGGCCACATGGGCTTCCTGCGGCGCCCGAAGGCCGCCGACCGCGCCGCCGTGGCCG
AGGCGCTGGCCCGCGTCGGCATGGAGGGGCTGCGCCACCGCCAGATCGGCGAGCTGTCTGGCGGGCAGCGGAAGCGCGTG
TTCCTCGCCCGGGCGCTGGCGCAGGAGGGGCAGGTGATCCTGCTCGACGAGCCCTTCACCGGCGTCGATGTCCAGACCGA
GGGCGAGATCGTGGCCCTCCTGCGCGAGCTGCGCGCCGAGGGGCGGGTGATGCTGGTCTCGACCCACAATCTCGGCTCGG
TGCCGGAATTCTGCGACCGCACCGTGCTCGTGAAGGGCACCGTGCTGGCCTACGGGCCCACCGAGACCACCTTCACCCAT
GCCAATCTCGAAGCGGCCTTCGGCGGCGTGCTCCGGCGCTTCACCCTGTCGGGCACGCTCCTCCATGACGACGACGACCC
GCGCGAGGTCAGCATCCTCACCGACGACGAGCGGCCCTTCGTGCAGTATGGCGGCCGCACCCACCGGCAGGAGGCCGAGG
ATGAGCGCGGCTGA

Protein sequence : 
MRPEIPSAGAEADAGISVRDVTVTYRNGHTALRHASFSLPRGTVAALVGVNGAGKSTLFKAVMGLVPVGSGEIRLLGRTV
PEALRQNLVAYVPQSEEVDWTFPVLVEDVVMMGRYGHMGFLRRPKAADRAAVAEALARVGMEGLRHRQIGELSGGQRKRV
FLARALAQEGQVILLDEPFTGVDVQTEGEIVALLRELRAEGRVMLVSTHNLGSVPEFCDRTVLVKGTVLAYGPTETTFTH
ANLEAAFGGVLRRFTLSGTLLHDDDDPREVSILTDDERPFVQYGGRTHRQEAEDERG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 5e-84 72
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 6e-84 71
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 1e-83 71
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 1e-83 71
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 8e-84 71

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_2564 YP_001044438.1 ABC transporter BAC0350 Protein 4e-84 71
Rsph17029_2564 YP_001044438.1 ABC transporter BAC0440 Protein 4e-84 64
Rsph17029_2564 YP_001044438.1 ABC transporter BAC0400 Protein 2e-46 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_2564 YP_001044438.1 ABC transporter VFG0526 Protein 4e-84 71