Gene Information

Name : Rsph17029_2563 (Rsph17029_2563)
Accession : YP_001044437.1
Strain :
Genome accession: NC_009049
Putative virulence/resistance : Virulence
Product : periplasmic solute binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2700550 - 2701443 bp
Length : 894 bp
Strand : +
Note : PFAM: periplasmic solute binding protein; KEGG: rsp:RSP_0904 ABC Mn+2/Fe+2 transporter, periplasmic substrate-binding protein SitA

DNA sequence : 
ATGAACATGCGACGGATCGGATGGGCCGCCTCGATGGCGATGCTCCTCATGGCGGGGCCGGCGCTCGCCGACCGGCTGAA
GGTCGCCACGACCTTCACGGTCATCGCCGACATGGCGCAGAACGTGGCGGGCGATGCGGCCGAGGTGGTGTCGATCACCC
GACCCGGCGCCGAGATCCACGGCTACGAGCCCACGCCCCGCGACATCGTGCGCGCCTGGGACGCGGACCTGATCCTCTGG
AACGGGCTCAATCTCGAGCTCTGGTTCGAGCAGTTCCTCTCGAACCTGAAGGATGTGCCGTCGGTGACGGTGAGCGACGG
GATCGAGCCGCTGGCCGTGGCGGGCGGCGAATATCGCGGCAGGCCCAATCCGCACGCCTGGATGGGCCTCGACAACGCCA
TGATCTACATCGACAACATCGCCCACGCGCTGGCCGAGGCCGATCCGGCCCATGCCGAGACCTATCGGGCCAATGCGGCA
GGCTATAAGGAGCGGCTCCGGGCGACCATCGGGCCCCTGCGCGACCGGATCGCAGCCCTGCCCGAGGAGCGGCGCTGGCT
CGTGACCTGCGAGGGCGCCTTTTCCTATCTCGCCCGCGACTTCGGGCTGAAGGAGCTCTATCTCTGGCCGATGAACACCG
ATCAGGTCGGCACGCCGCAGCAGGTGCGCACGGTGATCGACGGGGTGAAGGCCCACGCGATCCCGGCGGTCTTCTGTGAG
AGCACGGTGAACAACGCCCCCGCCCGGCAGGTCGCGCGCGAGACGGGGGCGGCCTACGGCGGCATGCTCTATGTGGACAG
CCTCAGCCCGCACGACGGACCGGTGCCGACCTATCTCGACCTCCTGCGGGTGACGGCCGAGACCATCGCGAACGGGCTGG
AGGGCACGAGATGA

Protein sequence : 
MNMRRIGWAASMAMLLMAGPALADRLKVATTFTVIADMAQNVAGDAAEVVSITRPGAEIHGYEPTPRDIVRAWDADLILW
NGLNLELWFEQFLSNLKDVPSVTVSDGIEPLAVAGGEYRGRPNPHAWMGLDNAMIYIDNIAHALAEADPAHAETYRANAA
GYKERLRATIGPLRDRIAALPEERRWLVTCEGAFSYLARDFGLKELYLWPMNTDQVGTPQQVRTVIDGVKAHAIPAVFCE
STVNNAPARQVARETGAAYGGMLYVDSLSPHDGPVPTYLDLLRVTAETIANGLEGTR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-82 64
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-82 64
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 8e-83 64
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-82 64
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-82 64

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_2563 YP_001044437.1 periplasmic solute binding protein BAC0349 Protein 5e-83 64
Rsph17029_2563 YP_001044437.1 periplasmic solute binding protein BAC0439 Protein 5e-81 62

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_2563 YP_001044437.1 periplasmic solute binding protein VFG0525 Protein 5e-83 64