Gene Information

Name : Rsph17029_4084 (Rsph17029_4084)
Accession : YP_001041798.1
Strain :
Genome accession: NC_009040
Putative virulence/resistance : Virulence
Product : ABC transporter related
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1134
EC number : -
Position : 23042 - 23851 bp
Length : 810 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pde:Pden_2127 ABC transporter related

DNA sequence : 
ATGATCGAGCTGCGCAACGTCTCGAAGAGCTACGTCCTGAACGGGACGCGCAAGGTGGTGGCGCGCGACCTGAACTTCAC
CTTCCCCTCGGGCGAGAGCGTGGGGCTTCTGGGGCGCAACGGGGCGGGCAAGTCGAGCCTCCTGCGGATGCTCGCGGGCA
CCATGCTGCCCGACACGGGCGAGATCCTTTCCAGCGGCACGATCTCCTGGCCGGTGGGCTTCTCGGGCAGCTTCCACCCC
GAGCTCACCGGAGCGCAGAACGTGCGCTTCGTGGCCCGCCTCTACGGCGTCGATACCGAGGCGATGATCGCCTTCGTGCG
CGACTTCGCCGAGATCGGCCAGCATTTCCACCTGCCGGTGCGCAGCTATTCCTCGGGGATGCGCTCGCGGCTGGCCTTCG
GCATCTCGATGGCGGTGCCCTTCGATACCTATCTCATCGACGAGGTGACGGCGGTGGGAGACGCAGCCTTCAGCGCCAAG
AGCAACGCGATCCTGCGCGCGCGGCTGGAGGAGAGCGGGGCGGTGATCGTCTCGCACTCCATGCCGCTCTTGAAGAAGCT
CTGCCGCTCGGGGGCGGTGCTCCACGACGGGCAGCTCTTCTATTACGAGCGCATCGAACAGGCGATCCGCCACCACGAGA
GCATGATGCGCGGCGCCCTGCCGCGCTGGATGCGGGGCGATCTCGACGAGGGCGAGGGCGGAGACGCGGGCGCCGCAGCC
CCCGGCCCTCGAGCCCGCGCCGCCCGGGCTGGTGGAGGGCGGGCAGCAAGGCCCGGCCCGGCTTCCGGGACGAGCGAGCC
CCAAGGCTGA

Protein sequence : 
MIELRNVSKSYVLNGTRKVVARDLNFTFPSGESVGLLGRNGAGKSSLLRMLAGTMLPDTGEILSSGTISWPVGFSGSFHP
ELTGAQNVRFVARLYGVDTEAMIAFVRDFAEIGQHFHLPVRSYSSGMRSRLAFGISMAVPFDTYLIDEVTAVGDAAFSAK
SNAILRARLEESGAVIVSHSMPLLKKLCRSGAVLHDGQLFYYERIEQAIRHHESMMRGALPRWMRGDLDEGEGGDAGAAA
PGPRARAARAGGGRAARPGPASGTSEPQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-44 48
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 2e-45 46
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 2e-46 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Rsph17029_4084 YP_001041798.1 ABC transporter related VFG1449 Protein 6e-45 48
Rsph17029_4084 YP_001041798.1 ABC transporter related VFG0258 Protein 1e-46 44
Rsph17029_4084 YP_001041798.1 ABC transporter related VFG0696 Protein 1e-46 43
Rsph17029_4084 YP_001041798.1 ABC transporter related VFG2563 Protein 3e-45 41