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Name : Cthe_0886 (Cthe_0886) Accession : YP_001037313.1 Strain : Clostridium thermocellum ATCC 27405 Genome accession: NC_009012 Putative virulence/resistance : Unknown Product : DNA polymerase I Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0749 EC number : 2.7.7.7 Position : 1061395 - 1064079 bp Length : 2685 bp Strand : - Note : has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair DNA sequence : ATGAGCAAGCAAAAATTGATGGCCATAGACGGAAACAGTATTCTTAACAGGGCTTTTTACGGGCTTCCCGAACTTCTGAC AACATCCGACGGGATATATACCAACGGAATTTATGTTTTTTTAAATATAATGCATAAATTTATTGAAGAGGAAAATCCCG AGTACATTTGCGTTGCGTTCGACCTTAAGGCTCCGACTTTCAGGCACAATAAATACGAAGGTTACAAGGCAAACAGGAAA GGAATGCCGGAAGAGCTCCGGGTTCAGGTTCCCCTGCTTAAGGAAGTTTTGGATGCAATGAATATAAAAAGACTTGAGAT GGAGGGGTTCGAGGCTGACGACATACTTGGTTCCGTTTCCTTGTGCGCCGAAAAAAAGGGTCTGGAAGTAATACTGGTTA CAGGGGACAGGGATGCTTTTCAATTGATCGGTCCTTCCACAAGGCTGAAACTTCCGCGGACGAGAGGCGGGAAAACAGAG GTTGAGGAATATGACTACAACAAGATTGTGGAGGTCTACGGAATCAAGCCGGAACAGTTTGTTGACGTCAAGGCTTTGGC GGGAGATACTTCCGACAATATTCCCGGTGTTCCGGGTATCGGCGAAAAGACGGCCCTGGCTCTCATAAAAGAATACAACA ATCTTGAAAACCTTTATAATTCATTGGACAGCATTAAAAAGAAAGGACTTAGGGAAAAGCTTGAAACTTTTAAGGAGCAG GCTTTTCTGAGCAGGGAGCTTGCCCTGATTGAAAGAAACATGCCGTCCCTTTGTGATATTGAAGAGCTGAAAAGAGTGGA GATTGACAGGGAAAAAACCTATGAGATATTTAAGAGGCTGGAATTTAGAAGCTTTATTGACAAGTTTGGATTGAACGATG TCCAAATCCAAAATACCGTGGAACTGAATGTGAAAATCGCAAAAAACGCCAGTGAACTTGAGAGTTTGAAAAACAATATT CTCAAGTCCAGAAAAGTTTGTATTTATCATTTGATTGACAAAACGGGCAGCTTTTCTCAAAAGCTTGCCGCCATTGCAAT TTCGCCCGTGGAGGATGAAGCATGGTATTTGGATTTTACCAATAATATTGATGAAGATGAGTTTTTCAGGCAGTTTAAGG ACGTTTTGGAGGATGGAAATATAAAGAAATACGGGCATGATTTGAAAAATTTTATAGTATATTTAAATAATCGGGGAATT GATTTTAACGGTTTGGCTTTTGACACAATGATTGGAGCTTATATAATAAACCCGTCAAAGGAGACCTATACGATATCCGA GCTGGCACAGGAGTATTTAAACTTGAGTGTAAAGGCGGTTGAGGAACTTGCGGGCAAGGGCAAAAGCTTTACTTTGTTTA AGGACATGCAGCCTGACGTTCTTTCAAAGACTGTTGGTGTTTATCCTCATGTTATAAGCAAAGTAAGCCGGAAAATTGAC AGCCTTCTTAAAGAAAACAACCAGGAGAGGCTTTATTATGACATTGAGCTTCCGCTGGTGCGGACCTTGGCGGATATGGA GTATTACGGATTCAAGGTTAATGTCGATGCTCTTGTGGAATTTTCGAAAGAGCTTCAGGAAAAGATAGATGTTGTAACAA AAGAAATATACACTTTGGCGGGAGAAGAGTTCAATATCAATTCTCCGAAACAGCTGGGAGTTATTTTGTTTGAGAAACTG GGTCTTCCCATTATTAAGAAAACAAAAACCGGATATTCAACCGATGCTGAAGTATTGGAAGAGCTTTCCGACAGGCATGA AATAGTGGAAAAAATACTGGAATACAGACAGCTTGTAAAGCTGAAATCCACTTATGCGGAAGGCCTTTTGGCGGTTATAA ATCCTTACACGGGAAAGATTCATTCAAGTTTCAACCAGACAGTGACGGCTACGGGAAGAATAAGCAGTACAGAGCCAAAT CTTCAGAATATACCGATAAAACTTGAAATGGGCAGGAAAATACGAAAAGTTTTTATACCTTCGGATGAAAACTATCTGCT TCTTGATGCGGACTATTCCCAGATAGAGCTTCGGGTTCTGGCCCACATAACCAATGACGAAAACATGATAAATGCGTTTT TAAACAACGAAGACATTCATACTTCCACGGCTGCATCGGTCTTTGGAATACCAAAAGAGGAAGTTACCCCTCTCATGAGG TCCAGAGCGAAAGCTGTCAATTTCGGTATTGTATACGGTATAGGGGACTTCAGTCTTGCAAAGGATCTTAAGATAAGCAG AAAGGAAGCCAGAGCATATATAGACGGTTATCTGGACAGATATCCAAATGTAAAGAAATATATGCATGATATTGTGGAAG AGGGAAAAGAAAAAGGTTTTGTAACCACCATGTTCATGAGAAGAAGGTACCTTCCTGAGCTTAAATCGCGCAACTTCAAC ATACGGTCTTTTGGAGAACGGGTTGCGATGAACACCCCGATACAGGGAAGTGCCGCGGATATAATCAAGATTGCCATGGT AAAGGTGCATGGAGAGCTTAAAAAAAGAAAGCTTAAATCCAGGCTGATACTTCAGGTTCACGATGAACTTATTGTAGAGA CGTTCAAGGATGAAAAAGAAGAGGTGGAAAAGATTTTACTTGAAGGCATGCAAAATGCCGTAAGTCTGAAAGTGCCGCTG GTTGTGGAGATTAAATCGGGCAGCAACTGGTATGAGACAAAGTAA Protein sequence : MSKQKLMAIDGNSILNRAFYGLPELLTTSDGIYTNGIYVFLNIMHKFIEEENPEYICVAFDLKAPTFRHNKYEGYKANRK GMPEELRVQVPLLKEVLDAMNIKRLEMEGFEADDILGSVSLCAEKKGLEVILVTGDRDAFQLIGPSTRLKLPRTRGGKTE VEEYDYNKIVEVYGIKPEQFVDVKALAGDTSDNIPGVPGIGEKTALALIKEYNNLENLYNSLDSIKKKGLREKLETFKEQ AFLSRELALIERNMPSLCDIEELKRVEIDREKTYEIFKRLEFRSFIDKFGLNDVQIQNTVELNVKIAKNASELESLKNNI LKSRKVCIYHLIDKTGSFSQKLAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKNFIVYLNNRGI DFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSVKAVEELAGKGKSFTLFKDMQPDVLSKTVGVYPHVISKVSRKID SLLKENNQERLYYDIELPLVRTLADMEYYGFKVNVDALVEFSKELQEKIDVVTKEIYTLAGEEFNINSPKQLGVILFEKL GLPIIKKTKTGYSTDAEVLEELSDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFNQTVTATGRISSTEPN LQNIPIKLEMGRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMR SRAKAVNFGIVYGIGDFSLAKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRRRYLPELKSRNFN IRSFGERVAMNTPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILLEGMQNAVSLKVPL VVEIKSGSNWYETK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| polA | YP_281523.1 | DNA polymerase I | Not tested | Not named | Protein | 8e-142 | 41 |
