Gene Information

Name : Cthe_0539 (Cthe_0539)
Accession : YP_001036968.1
Strain : Clostridium thermocellum ATCC 27405
Genome accession: NC_009012
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 657907 - 658590 bp
Length : 684 bp
Strand : +
Note : PFAM: SMC protein-like; ABC transporter related; SMART: ATPase; KEGG: cac:CAC0526 ABC transporter, ATPase component

DNA sequence : 
ATGGAGATATTGAGGGTTGAAAACGTGACAAAAACGTACGGCACCGGAGAGAACATGGTCAGGGCATTGGACGGTGTTTC
ATTTTCGGTAAAAAAGGGTGAATTCATTGCAATTGTAGGGCCATCGGGTTCGGGCAAATCCACACTTTTGCATATTTTAG
GCGGAGTGGACAAACCTACAAGCGGCAAGGTTTTTATGGACGGCAAGGATGTTTATGCTCAAAATGACGAGCAGCTTGCA
ATTTTTCGCCGCCGGCAGGTGGGGCTCATATATCAGTTTTACAACCTTATACCCGTGTTAAATGTAGTGGAGAATATTAC
ACTTCCGGTACTTATGGACGGAAGAAAAGTGAACAAAGAACGACTGGAAGAGTTGATTGAGACTTTGAATCTTAAAGGAA
GGGAAAATCATTTGCCCAATCAGCTGTCGGGAGGCCAGCAGCAAAGGGTGTCCATTGGCAGGGCATTGATAAATGCTCCT
TCGGTGGTGCTTGCGGACGAACCCACGGGAAACCTGGATTCGAAAAACAGCCAGGAAATTGTGGAACTTTTGAAACTCTC
CAATAAAAAATACAATCAAACCTTGATTGTTATTACCCATGACGAAAATATTGCGTTGCAGGCAAACCGAGTAATTGCCA
TTGAGGACGGGAGGATCATTCGTGACGAGGTGATTCGGCAATGA

Protein sequence : 
MEILRVENVTKTYGTGENMVRALDGVSFSVKKGEFIAIVGPSGSGKSTLLHILGGVDKPTSGKVFMDGKDVYAQNDEQLA
IFRRRQVGLIYQFYNLIPVLNVVENITLPVLMDGRKVNKERLEELIETLNLKGRENHLPNQLSGGQQQRVSIGRALINAP
SVVLADEPTGNLDSKNSQEIVELLKLSNKKYNQTLIVITHDENIALQANRVIAIEDGRIIRDEVIRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 6e-37 44
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-38 44
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-38 44
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-38 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cthe_0539 YP_001036968.1 ABC transporter-like protein CP001581.1.gene798.p Protein 1e-63 60
Cthe_0539 YP_001036968.1 ABC transporter-like protein CP001581.1.gene598.p Protein 3e-59 54
Cthe_0539 YP_001036968.1 ABC transporter-like protein NC_012469.1.7686878. Protein 2e-41 43