Gene Information

Name : Cthe_0516 (Cthe_0516)
Accession : YP_001036946.1
Strain : Clostridium thermocellum ATCC 27405
Genome accession: NC_009012
Putative virulence/resistance : Unknown
Product : IS66 Orf2 like
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3436
EC number : -
Position : 631673 - 632029 bp
Length : 357 bp
Strand : -
Note : PFAM: IS66 Orf2 like; KEGG: spn:SP1442 IS66 family element, Orf2

DNA sequence :
ATGTTAGGTGACATCTCCAAGGCTGAAAAGATCTATATAGCCTGCGGGTATACAGACATGCGGAAAGCTATTGACGGACT
GGCAGCTATTGTTCAACAGAACTTTCAGTTGAACCCATTCCAGAACAGTCTGTTTCTCTTTTGTGGCCGGCGGCGGGATC
GGATGAAAGCGCTCTATTGGGAAGGCGACGGTTTTGTTCTCCTATACAAGCGCCTGGAAAACGGAAAATTTCAATGGCCC
ATGAATGCTGATGCGGTTCGGGCACTCACCCCCCAGGAATTCCGTTGGCTGCTTGAAGGCCTCTCAATTGACCAGCCTAA
AGCAGTAAAAAAGATAGAGATAGGAGCCTGCATTTAA

Protein sequence :
MLGDISKAEKIYIACGYTDMRKAIDGLAAIVQQNFQLNPFQNSLFLFCGRRRDRMKALYWEGDGFVLLYKRLENGKFQWP
MNADAVRALTPQEFRWLLEGLSIDQPKAVKKIEIGACI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 9e-16 44
unnamed AAF71493.1 unknown Not tested Hrp PAI Protein 6e-16 43
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 4e-13 43
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 4e-13 43
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 5e-12 43
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 5e-12 43
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 1e-12 42
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 2e-12 42
unnamed AAL08461.1 unknown Not tested SRL Protein 1e-12 42
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 2e-12 42
unnamed AAC31493.1 L0014 Not tested LEE Protein 1e-12 42
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 1e-12 42
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 2e-12 42
unnamed AAL99258.1 unknown Not tested LEE Protein 1e-12 42
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 2e-12 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cthe_0516 YP_001036946.1 IS66 Orf2 like VFG1698 Protein 1e-13 43
Cthe_0516 YP_001036946.1 IS66 Orf2 like VFG0792 Protein 5e-13 42
Cthe_0516 YP_001036946.1 IS66 Orf2 like VFG1052 Protein 5e-13 42
Cthe_0516 YP_001036946.1 IS66 Orf2 like VFG1709 Protein 5e-13 42