Gene Information

Name : Cthe_3170 (Cthe_3170)
Accession : YP_001039558.1
Strain : Clostridium thermocellum ATCC 27405
Genome accession: NC_009012
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 3746174 - 3746827 bp
Length : 654 bp
Strand : +
Note : PFAM: ABC transporter related; SMART: ATPase; KEGG: blo:BL1135 ATP binding protein of ABC transporter

DNA sequence : 
GTGGCTCTCCAGGACATTAACATGGAAATTTACAAAGGTGAATTTTGTTGCTTTTTGGGTACTTCCGGCTCGGGAAAATC
AACGCTTTTGAATGTGCTTGCCGGACTTGAAAAGCCAACCAGGGGAAGTATAAAAATCAAAAATGTAAATATTGAAAAGC
TTAATGAAAAAAAACTTGCGGCATTTCGACAGGATAATGTTGGCTTTGTATTTCAGGCATACAATCTTGTCAGTCATCTG
GACGCTGTTGAAAATGTCAGCCTTCCTCTCATGTTCAAAGGCGTACCCAAAAAGGAAAGGACGAAAAGAGCTGTTGAGCT
TTTGAAAGCAGTGGGGCTTTCCAAACATCTCAGACACAAGCCCACCCAGATGAGCGGAGGTCAACAGCAAAGAGTCGGCA
TAGCAAGAGCCTTTGTTACAAATCCCGAAATTGTATTTGCCGATGAGCCTACAGGAAATCTGGATTCAAAGACATCCATG
GAGGTTCTGGAGCTTATGGCGGGTTTGGCAATGAAAAACCGCCAGACTTTGATTATGGTTACCCATGACCTTAATATTGC
AAAACGGGCTGACAGAATAATTTACATATTGGACGGAAGAATTGAAGGAATAGAAGAAAATCAGTATGCGGGGGTTACGT
ATGAGCAAAATTAA

Protein sequence : 
MALQDINMEIYKGEFCCFLGTSGSGKSTLLNVLAGLEKPTRGSIKIKNVNIEKLNEKKLAAFRQDNVGFVFQAYNLVSHL
DAVENVSLPLMFKGVPKKERTKRAVELLKAVGLSKHLRHKPTQMSGGQQQRVGIARAFVTNPEIVFADEPTGNLDSKTSM
EVLELMAGLAMKNRQTLIMVTHDLNIAKRADRIIYILDGRIEGIEENQYAGVTYEQN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 46
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-34 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 43
unnamed AAP55232.1 unknown Not tested SaPIbov2 Protein 2e-24 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cthe_3170 YP_001039558.1 ABC transporter-like protein NC_012469.1.7686878. Protein 1e-39 48
Cthe_3170 YP_001039558.1 ABC transporter-like protein CP001581.1.gene598.p Protein 8e-40 47
Cthe_3170 YP_001039558.1 ABC transporter-like protein CP001581.1.gene798.p Protein 3e-35 45
Cthe_3170 YP_001039558.1 ABC transporter-like protein NC_008702.1.4606598. Protein 3e-35 45
Cthe_3170 YP_001039558.1 ABC transporter-like protein NC_012469.1.7685735. Protein 4e-32 43