Gene Information

Name : Cthe_0292 (Cthe_0292)
Accession : YP_001036724.1
Strain : Clostridium thermocellum ATCC 27405
Genome accession: NC_009012
Putative virulence/resistance : Unknown
Product : transposase, mutator type
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG3328
EC number : -
Position : 366400 - 367620 bp
Length : 1221 bp
Strand : +
Note : PFAM: transposase, mutator type; KEGG: sth:STH2289 transposase

DNA sequence :
GTGGCTACTAATAATAGAATGGCACTTTTAGAACAACTTAGCAAGTATGTTGTTGAAAAAGATAAAGATTTTTTAAAAGA
AGCATTAACATTACTCATTAATGCCCTAATGGATGCGGAAGTTACATCAATAATAGGTGCTGAAAAGTATGAAAGAAATA
ATAATAGAAACAACTATCGCAATGGATATCGTCTAAGAGAATGGGATACTCGAGTAGGAACATTACAGTTAAGCATTCCC
AAGTTACGTCACGGAAGTTATTTTCCAAGTCTTTTAGAACCGAGGAAAATGTCAGAGAAAGCATTATTGAATGTAGTTCA
GGAAGCCTATGTTCATGGAGTAAGTACCAGGAAGGTGGATGAACTTGTAGAAGCTCTTGGAATGAAAGGGATTGATAAAA
GCGAAGTATCAAGAATCAGTAAGCAACTGGATGAATTTGTAGAAGAATTTAAAAACCGTAGACTGGAAGGAGAATATCCT
TACCTTTGGCTTGATGCCACTTTCCCCAAGGTTCGGGAAGGAGGCAGGGTATGCAGTATGGCACTAGTTATAGCAGTAGG
AGTTAATCAACAAGGTGAACGGGAAATATTAGGTTTTGATGTAGGGATGAGTGAAGACGGGGCTTTTTGGGAGGAGTTTT
TAAGAAGGCTGGTAGCAAGGGGTCTAAAAGGTGTAAGGCTTGTAATCAGTGATGCACATGAAGGGCTGAAGGCTGCAATA
AAGAAGATTTTAACGGGAAGTGCATGGCAAAGATGCCGTGTACATTTTATGAGAAACGTATTAAGCCAGGTACCAAAGCA
TTATCAGGGAATGGTATCATCGATAATACGGACAATATTTGCCCAGAATGATCAGGAATCTGCGAGGGAACAGTTAAGGC
ATGTAGTAGATGAGCTTAAAAATCGTTTTCCAAAAGCAATGAAAATTCTTGAAGAAGCAGAAGAAGAAATCCTGGCATAT
ATGGCTTTTCCCCGTGAGCATTGGGCACAGATACACTCCACCAATCCTCTTGAGAGACTTAACCGGGAAATTCGCCGTCG
AACGGATGTTGTTTGCATATTTCCAAATCGTGAGGCGGTAATCCGATTGGTAGGAGCAATGCTCATGGAACAAAATGATG
AATGGAAAGTAGGGCGGCGCTATTTCAGTCTGGAATCAATGTCAAAGATTACATCGATAAATGAATTTACATTGACACCA
GTAGCTTTATTACATAAATGA

Protein sequence :
MATNNRMALLEQLSKYVVEKDKDFLKEALTLLINALMDAEVTSIIGAEKYERNNNRNNYRNGYRLREWDTRVGTLQLSIP
KLRHGSYFPSLLEPRKMSEKALLNVVQEAYVHGVSTRKVDELVEALGMKGIDKSEVSRISKQLDEFVEEFKNRRLEGEYP
YLWLDATFPKVREGGRVCSMALVIAVGVNQQGEREILGFDVGMSEDGAFWEEFLRRLVARGLKGVRLVISDAHEGLKAAI
KKILTGSAWQRCRVHFMRNVLSQVPKHYQGMVSSIIRTIFAQNDQESAREQLRHVVDELKNRFPKAMKILEEAEEEILAY
MAFPREHWAQIHSTNPLERLNREIRRRTDVVCIFPNREAVIRLVGAMLMEQNDEWKVGRRYFSLESMSKITSINEFTLTP
VALLHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnp7109-24 YP_001800852.1 transposase for insertion sequence Not tested Not named Protein 2e-53 45
EF0529 NP_814305.1 IS256, transposase Not tested Not named Protein 4e-53 41
SERP1584 YP_189149.1 IS256-like transposase Not tested ¥ÕSP¥â Protein 4e-53 41
SERP1587 YP_189152.1 IS256-like transposase Not tested ¥ÕSP¥â Protein 4e-53 41
IS256 BAC22941.1 IS256 transposase Not tested etd PI Protein 3e-53 41
unnamed BAC67572.1 transposase for insertion sequence element IS256 in transposon Tn4001 Not tested Type-IVc SCCmec Protein 3e-53 41
unnamed BAC67574.1 transposase for insertion sequence element IS256 in transposon Tn4001 Not tested Type-IVc SCCmec Protein 3e-53 41