Gene Information

Name : Cthe_2750 (Cthe_2750)
Accession : YP_001039142.1
Strain : Clostridium thermocellum ATCC 27405
Genome accession: NC_009012
Putative virulence/resistance : Unknown
Product : IstB-like ATP-binding protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 3245369 - 3246094 bp
Length : 726 bp
Strand : +
Note : PFAM: IstB-like ATP-binding protein; SMART: ATPase; KEGG: dsy:DSY0816 hypothetical protein

DNA sequence :
ATGTATGAACTAATAGCCAAACATTGCAGAAGCCTGAAACTTGGTTCACGGATTGTTCAAAACTACAAAAATATTGAGGC
CAAAACACATGAAGAATTTCTTGAGAAGCTATTGGCTATGGAAGTAGAAGCTCGTGAACGGAATCGTAGGAATCACATGC
TTAAGCAGGCACGTTTTGATTTGATAAAGACCTTTGGAGACTATCGTTTTGAAAAAATGATAATCCCGAACAGTATTGAT
ATAGAAGCATTGAGAAATGCCTCGTTCATTGATAAAAAAGAAAATCTAATTCTCTACGGTCCTGTTGGACTAGGTAAAAC
GCATCTTGCTACTGCCATTGGTGTAGAAGCCTGCAATCAGGGCAGACATGTACGATTTTTCAGGACAGCGTCCCTTGTCA
ATCAACTATTGGATGCAAAGGCAGAAGGAAGCCTAAAACGGTTCTTAAAGCAGTTAGAGAAAGTAGAACTCTTGATTTGT
GATGAATGGGGATTTATTCCCTTTGAACGTGAGGGCTCACAACTTTTATTCCAGGTCATTTCGGACTGTTACGAGCGTAA
AAGTATGATTATAACTACAAATTTGGAATTCAGCAAATGGAACGGTATTTTTTACGATGAAAAGTTAACCAGTGCTATTA
TAGACCGTATAATCCACCATAGTCATCTAATCGTTTTTGACGGCCCTAGTGACCGACTGGTGAATTCACTTATGAGGAAA
CAGTGA

Protein sequence :
MYELIAKHCRSLKLGSRIVQNYKNIEAKTHEEFLEKLLAMEVEARERNRRNHMLKQARFDLIKTFGDYRFEKMIIPNSID
IEALRNASFIDKKENLILYGPVGLGKTHLATAIGVEACNQGRHVRFFRTASLVNQLLDAKAEGSLKRFLKQLEKVELLIC
DEWGFIPFEREGSQLLFQVISDCYERKSMIITTNLEFSKWNGIFYDEKLTSAIIDRIIHHSHLIVFDGPSDRLVNSLMRK
Q

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 1e-33 44
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 1e-33 44
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 2e-33 44
api84 CAF28558.1 putative transposase Not tested YAPI Protein 1e-33 44
unnamed CAA21402.1 - Not tested HPI Protein 2e-33 44
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 1e-33 44
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 4e-34 44
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 1e-33 44
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 1e-33 44
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 2e-33 44
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 1e-33 44
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 2e-33 44
y1094 CAD33719.1 ORF B protein Not tested PAI I 536 Protein 2e-30 43
istB AAN62229.1 putative NTP-binding protein of insertion sequence Not tested PAGI-3(SG) Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Cthe_2750 YP_001039142.1 IstB-like ATP-binding protein VFG1606 Protein 8e-34 44
Cthe_2750 YP_001039142.1 IstB-like ATP-binding protein VFG1515 Protein 8e-34 44
Cthe_2750 YP_001039142.1 IstB-like ATP-binding protein VFG1663 Protein 2e-34 44
Cthe_2750 YP_001039142.1 IstB-like ATP-binding protein VFG1627 Protein 8e-34 44
Cthe_2750 YP_001039142.1 IstB-like ATP-binding protein VFG1460 Protein 1e-30 43