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Name : Cthe_2650 (Cthe_2650) Accession : YP_001039042.1 Strain : Clostridium thermocellum ATCC 27405 Genome accession: NC_009012 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 3131748 - 3133571 bp Length : 1824 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility-like; KEGG: ctc:CTC02268 CapD pro DNA sequence : ATGAAGAATTTGAACAACAGAATATGTCTGGCCGCCGATTGCTTGTTGGTAAACGTGGCTTTGTTTGCCGCACTTATGAT AAAGTTTGATGCAAACATCCCGGAAAATTTGCTTAAAATAATACCTTTTAATTTTCTTATTACAACTACGGTAAGCATAT TAGTATTTAATATATTCGGCATATATTCAATGCTATGGAACTATGCAAGTGTTGAAGAGCTTTTGAAAATATTTTGGGCA ACAATGACATCGGTAATTGTCCAACTTCTTTTGGCTGCATATTTTAATGTGATGTTCCCTGTTTCGGTTTACATTACATG CTGGATGATTACATTTTATTTTATAGGCGGAACAAGATTCATCGTCAGAATAACCAGGAGTATAAAAGCAAAAAAGAGAA AAAACACCCACAAAAAAAGAATAATGATTATCGGCGCCGGTGATACCGCTTCACTGTTGATTAAGGAAACAAAAAACAAT AAGCGCAGCATATATGAGCCGGTAGTTGCAATTGACGACGACCCTAAAAAGCACAACACCCAAATAAACGGTGTTCCCAT CATAGGAGGCAGGGATAAAATCATAGAAGCCGCAAAGGATATGTCTATAGAAGAAATAGTTTTAGCCATGCCGTCGGTTT CAAAAAAAGAAACGCTGGAAATTATAGACTTGTGCCAGAAGACAGGCTGCAAATTAAAAGTTTTGCCAAGCGTGTACGGC ATTGTAAACGGAGAAGTAAGCATCAAGGAAATAAGAGACGTCACTGTCGAGGACCTTTTGCCAAGAGATGAAATTTCCCT TTCCATAGAAGAGATATCCGGATATCTTAAAGGTGAAACCATTCTGGTTACCGGGGGAGGAGGTTCCATTGGCTCCGAGC TTTGCAGGCAAATAGCATCTTATGAGCCTAAAACCCTCCTGGTGTTTGATATATACGAAAATAATGCTTACGAGCTTCAA AATGAACTTGTGCAAAAATATAAAGGCAATCTGGATATCAAAGTGATAATAGGATCAATACGGGATAAAAAAAGACTGGA TTATGTGTTTTCCCAATACAAGCCGGGCATAGTGTTTCATGCAGCGGCTCACAAGCATGTCCCGCTTATGGAGTTCAATC CCCAGGAAGCCGTCAAGAACAATGTATTCGGCACATTAAATGTTGCCGAATGCGCCCATCAATACAACTGTAAAAAATTT GTGCTAATCTCGACCGACAAAGCGGTAAACCCAACAAGCATAATGGGAGCAACAAAAAGAATTGCCGAGCTTATAATACA ATATATGAACAGCATAAGCAAAACAAAATTTTGCGCCGTAAGATTCGGCAACGTACTGGACAGCAACGGAAGCGTCATCC CCCTTTTTAAAAAGCAGATTGAACAGGGAGGCCCCATAACAATAACCCATCCCGAAGTATCCCGGTATTTTATGACCATT CCCGAGGCGGTAAGCCTTGTCATTCAATCCGGAGCCATGATGGAAGGGGGAGAAATATTTATACTTGACATGGGCAAACC GGTTAAAATTACCGACCTTGCCAGAACGTTAATTTCTTTGTCGGGGTTAAAGCCCGGTGTTGACATAGATATTGAATATA TTGGATTAAGACCAGGCGAAAAGCTCCATGAAGAGCTGCTTATTTCAGAGGAAGGAGTCAGCGTAACAAAGAATGACAAA ATATTTATTGAAAAGAGCAGAATGATTGACTTTGACAAGTACATGCAGAGAATAAAAGAGTTTGAGCTTGATAATTTGGA TGACAGCGAAAAAGTGATAAATTTTATCAAAGAATTAGTTCCCACCTATAAGAAAAATTTGTAA Protein sequence : MKNLNNRICLAADCLLVNVALFAALMIKFDANIPENLLKIIPFNFLITTTVSILVFNIFGIYSMLWNYASVEELLKIFWA TMTSVIVQLLLAAYFNVMFPVSVYITCWMITFYFIGGTRFIVRITRSIKAKKRKNTHKKRIMIIGAGDTASLLIKETKNN KRSIYEPVVAIDDDPKKHNTQINGVPIIGGRDKIIEAAKDMSIEEIVLAMPSVSKKETLEIIDLCQKTGCKLKVLPSVYG IVNGEVSIKEIRDVTVEDLLPRDEISLSIEEISGYLKGETILVTGGGGSIGSELCRQIASYEPKTLLVFDIYENNAYELQ NELVQKYKGNLDIKVIIGSIRDKKRLDYVFSQYKPGIVFHAAAHKHVPLMEFNPQEAVKNNVFGTLNVAECAHQYNCKKF VLISTDKAVNPTSIMGATKRIAELIIQYMNSISKTKFCAVRFGNVLDSNGSVIPLFKKQIEQGGPITITHPEVSRYFMTI PEAVSLVIQSGAMMEGGEIFILDMGKPVKITDLARTLISLSGLKPGVDIDIEYIGLRPGEKLHEELLISEEGVSVTKNDK IFIEKSRMIDFDKYMQRIKEFELDNLDDSEKVINFIKELVPTYKKNL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-99 | 47 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 6e-103 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cthe_2650 | YP_001039042.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 6e-97 | 44 |
| Cthe_2650 | YP_001039042.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 5e-78 | 43 |
