|
Name : Cthe_2334 (Cthe_2334) Accession : YP_001038729.1 Strain : Clostridium thermocellum ATCC 27405 Genome accession: NC_009012 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2781498 - 2783342 bp Length : 1845 bp Strand : - Note : PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; CoA-binding; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility-like; KEGG: tte:TTE0 DNA sequence : ATGAAACAAAAGATTAGAGCAAATGGATTAATTGCAATTGATGTGTTTTTAGTAAATATATCGCTTGTTATTGCATATCT TTTGAGGTTTGACTTAAACTATGCAAATATTCCGGAACGTTTTATCGAACCCTTGGTAAAGCTCGCCGTAATTTCAACAG TTGTTAAACTTATAACTTATGCTGTGATGAAGCTTTACAACAGTTTGTGGAAGTATGCGGGAATATATGAAGTGGTTATG GTTATAGCTGCTTCATTTATCAGCAATTCAATAATGATAAGCTATGTGTTTTTATCCCAAACGCCCGTACCTCGAAGTAT ATTCCTGATATGCATCTTGACGGATATTGCCCTGATTGGGGGAGTACGGTTTGCTTACAGGGTGTTTAGAAGAATTGTCA AAGGGGAAATGATTCGTTTTACAAATTCAAAGAGGGTGCTGATTGCAGGCGCCGGGGACGCCGGCGCGATAATTGTGAAG GAAATGAAGTCCCATCCTAAACTTAAAAGCACTCCGGTGGCGTTTGTAGATGACGATAAATACAAAATAGGCAAAAAAAT CAGCGGAGTGCCTGTGGTGGGTGAGACAAAGGATGTTTCAGAAATAATACAGAAGCTGCAGATAGACGAAGTCATTATTG CCATGCCGTCTGCCAGCCACAAAAAAATAAATGATATATACACCGGCTGTGCCCAAACAAACTGCAAGGTAAAGATACTT CCGTCGGTTTCACAGCTGATTGATGAATCTGTTGTCATGCAGAAAATAAGGGATGTGAATATAGAAGACCTTTTGGGAAG GGAACCTGTACATCTTGATATTGAAGAGATAGGTTCGTATCTGAAGGACCGGGTGGTAATGGTTACCGGGGGAGGAGGCT CAATCGGTTCGGAGCTGTGCAGGCAGATAGCGAATTTTTTGCCGAAGAGGCTTGTTATTTTGGATAATTATGAAAACAAT GCATATGACATACAGAATGAACTTTTGTACAAGCATCCGGATTTAAAGCTTGACACAGTGATTGCCAATATCAGAGAAAA ACAGAGAATGGAAAACATATTTAAAAAATACAGGCCAGACGTTGTATTTCATGCTGCGGCCCATAAACATGTCCCTCTTA TGGAGGACAATCCTACGGAGGCGATAAAAAATAATGTGTTTGGCACCTTAAATGTGGCTGAATGTGCGGACAAGTATGGA ACTAAAAGGTTTGTACTTATATCCACGGACAAGGCCGTCAACCCTACGAATATTATGGGTGCGACAAAAAGAATTGCAGA AATGATTATCCAGGCGATGAATGAAAACAGCAAAACCGAGTTTGTTGCGGTAAGGTTTGGAAACGTGCTTGGAAGCAACG GAAGTGTTGTACCACTGTTTAAAAAGCAGATAGAAAGGGGAGGACCGGTAACGGTCACCCATCCGGAAATCACCAGATTC TTTATGACAATTCCGGAGGCTGTGCAGCTGGTACTACAAGCTGGGGCAATGGCAAAGGGCGGAGAAATATTTGTTCTTGA TATGGGTGAACCTGTGAAAATAAGTGAGCTTGCCCGAAACTTGATAAGACTTTCGGGTTTTGAGCCGGATGTCGATATAA AGATTGAGTATATAGGTTTGAGACCCGGCGAAAAGCTTTATGAGGAACTTATGCTCAGTGAGGAAGGGCTTTTGGCAACC AAAAACGACAAAATATATGTTACAAAGCCTGTTCATATTGATTTTAAGGTGCTCCAGAGGGAGCTGGATTGCCTTAAGGA TATTATGGTTACAAATTCTGAAGAGATTTCAGAATATATTAAACTTATTGTGCCTACGTACAAGAAAGCGGGAAACGGAA ATTAA Protein sequence : MKQKIRANGLIAIDVFLVNISLVIAYLLRFDLNYANIPERFIEPLVKLAVISTVVKLITYAVMKLYNSLWKYAGIYEVVM VIAASFISNSIMISYVFLSQTPVPRSIFLICILTDIALIGGVRFAYRVFRRIVKGEMIRFTNSKRVLIAGAGDAGAIIVK EMKSHPKLKSTPVAFVDDDKYKIGKKISGVPVVGETKDVSEIIQKLQIDEVIIAMPSASHKKINDIYTGCAQTNCKVKIL PSVSQLIDESVVMQKIRDVNIEDLLGREPVHLDIEEIGSYLKDRVVMVTGGGGSIGSELCRQIANFLPKRLVILDNYENN AYDIQNELLYKHPDLKLDTVIANIREKQRMENIFKKYRPDVVFHAAAHKHVPLMEDNPTEAIKNNVFGTLNVAECADKYG TKRFVLISTDKAVNPTNIMGATKRIAEMIIQAMNENSKTEFVAVRFGNVLGSNGSVVPLFKKQIERGGPVTVTHPEITRF FMTIPEAVQLVLQAGAMAKGGEIFVLDMGEPVKISELARNLIRLSGFEPDVDIKIEYIGLRPGEKLYEELMLSEEGLLAT KNDKIYVTKPVHIDFKVLQRELDCLKDIMVTNSEEISEYIKLIVPTYKKAGNGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 2e-107 | 49 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-99 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Cthe_2334 | YP_001038729.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 3e-103 | 44 |
| Cthe_2334 | YP_001038729.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 3e-84 | 43 |
