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Name : Cthe_1955 (Cthe_1955) Accession : YP_001038366.1 Strain : Clostridium thermocellum ATCC 27405 Genome accession: NC_009012 Putative virulence/resistance : Unknown Product : RNA binding S1 Function : - COG functional category : K : Transcription COG ID : COG2183 EC number : - Position : 2327899 - 2330055 bp Length : 2157 bp Strand : - Note : PFAM: RNA binding S1; SMART: Resolvase, RNase H-like fold; KEGG: mmp:MMP1127 RNA binding S1 DNA sequence : ATGTCAGATATTATTTCCACACTTGTAAAAGAGTTTAATCTCAAGCCTTTCCAGGTGGAAAACACCGTAAAACTTATTGA CAGCGGCAATACCATTCCCTTTATTGCAAGGTACAGGAAAGAAATAACGGGAGAATTGAACGATCAGGTGCTAAGGCAGC TTCATGAAAGACTGATTTACCTGAGGAACCTTGAGGCAAGAAAAGAAGAAGTTCGGCGCCTGATTGACGAGCAGGGAAAG CTTACCGCGGAAATTACGGCATCTCTTGAAAAAGCGACCACCCTCCGGGAGGTTGAAGATATATACAGGCCTTTCAGGCC AAAAAGAAGAACCAGGGCGACTGTTGCAAAGGAAAAAGGACTTGAACCTTTGGCCGAAATTATTATGGCCCAGGAACTTA AAACCGGCAGTATTGAAGACATAGCCAAGCCTTTTATAAATCCTGAGAAGGAAGTCAATACCGTCGAGGATGCCTTAAAC GGAGCAATGGACATAATAGCCGAAGACATTTCGGACAATCCGCATATCAGAAGTATTGTGCGGGACGTGTTTATGAAACA AGGAATGATTGTGTCCAAAAAGAAGAAGGATGAAGATTCGGTATACAGAATGTACTATGATTTCTCGGAACCGGTGGCAA AAATAGCCGGTCACAGGGTTCTTGCGATAAACAGGGGAGAAAAGGAAGAGTTTTTGCAAGTCAAAATTGAAGTTCCTGAA GAAACGCTTATGGAGCAGCTTAAGGCGAAACTTGTAAAGAGGCCTCCTTCCATAACGTCGGAATATGTAGAAAAGGCGTT GGCGGACTCTTATGAGCGCCTTATTTTTCCTTCGGTTGAGAGGGAAGTAAGGAATGAACTTACGGAGAATGCCGAGGAAC AGGCGATAAAGGTCTTTGCGACCAATCTTAAAAATCTTTTGCTCCAGCCTCCTGTGAAAGGAAAAACCGTTTTGGGGCTT GACCCTGCATACAGGACGGGCTGCAAAATTGCAGTGGTGGATGAGACGGGAAAAGTACTTGACACTGCCGTAATATATCC GACACCTCCCCAGAACAAGGTTGAGGAAGCAAAAGAGATTATGAAGCGGCTTATTGAGAAACACGGTGTTGATATAATAT CAATAGGCAACGGGACTGCTTCGAGGGAGTCTGAAATATTTGTCGCCGAGCTTTTGAAGGAGATAGACAGAAAAGTTTAC TATATGGTGGTAAGCGAAGCGGGAGCTTCGGTTTATTCCGCTTCGAAGCTTGGGGCGGAGGAATTTCCCGACTTTGACGT GGCTTTAAGAAGTGCTGTGTCCATAGCCAGAAGGCTTCAGGACCCATTGGCGGAGCTGGTTAAAATAGATCCCAAATCCA TAGGCGTGGGCCAGTACCAGCACGACATGAATCAAAAGCGGCTGAGTGAGACTTTGCAGGGCGTGGTTGAAGATTGTGTA AACAGCGTGGGCGTTGACCTGAATACGGCCTCACCGTCTCTTTTGTCTTACATCTCGGGAATAAACTCCGTAATTGCAAA AAATATTGTGGAATACAGGGAAACCAACGGAAAGTTTAAAAGAAGAGAAGAACTCAAAAAAGTTAAGAAACTAGGTGACA AAACTTTCGAGCAATGTGCCGGCTTTCTTAGGATACCTGACGGAGACAATGTTCTTGACAATACTTCCGTACATCCGGAG TCTTATGAGGCGGCCAAAAAGCTTCTTGATATTATGGGATACAGCCTTGAAGATGTGAAGAACAGAAAACTTGATGGACT TGTGGAAAAAGTGGAGAAAATGGGTATGGAAAAAGTTGCCAGGGAGATTGGTGTCGGAGTGCCGACTTTGAAAGATATTA TAAAAGAGCTTTTAAAGCCTGGACGCGACCCCAGGGATGAGCTTCCGAAACCGATGCTTCTTACCGACGTGCTGCATTTG GAGGATTTGAGGCCGGGCATGATATTGACCGGAACCGTAAGGAATGTTGCCGACTTTGGTGCCTTTGTGGATGTGGGAGT GCACCAGGACGGGCTGGTTCACATATCCGAGCTTAGCGACAAGTATGTAAAAAGTCCCATGGATGTGGTGTCGGTGGGGG ATATAGTGAAGGTCAGAATTTTGGATGTTGATGTTGAAAGAAAAAGAATATCCATGAGCATGAAGGGTGTCAATTAA Protein sequence : MSDIISTLVKEFNLKPFQVENTVKLIDSGNTIPFIARYRKEITGELNDQVLRQLHERLIYLRNLEARKEEVRRLIDEQGK LTAEITASLEKATTLREVEDIYRPFRPKRRTRATVAKEKGLEPLAEIIMAQELKTGSIEDIAKPFINPEKEVNTVEDALN GAMDIIAEDISDNPHIRSIVRDVFMKQGMIVSKKKKDEDSVYRMYYDFSEPVAKIAGHRVLAINRGEKEEFLQVKIEVPE ETLMEQLKAKLVKRPPSITSEYVEKALADSYERLIFPSVEREVRNELTENAEEQAIKVFATNLKNLLLQPPVKGKTVLGL DPAYRTGCKIAVVDETGKVLDTAVIYPTPPQNKVEEAKEIMKRLIEKHGVDIISIGNGTASRESEIFVAELLKEIDRKVY YMVVSEAGASVYSASKLGAEEFPDFDVALRSAVSIARRLQDPLAELVKIDPKSIGVGQYQHDMNQKRLSETLQGVVEDCV NSVGVDLNTASPSLLSYISGINSVIAKNIVEYRETNGKFKRREELKKVKKLGDKTFEQCAGFLRIPDGDNVLDNTSVHPE SYEAAKKLLDIMGYSLEDVKNRKLDGLVEKVEKMGMEKVAREIGVGVPTLKDIIKELLKPGRDPRDELPKPMLLTDVLHL EDLRPGMILTGTVRNVADFGAFVDVGVHQDGLVHISELSDKYVKSPMDVVSVGDIVKVRILDVDVERKRISMSMKGVN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| NMB0075 | NP_273139.1 | transcriptional accessory protein Tex | Not tested | IHT-A | Protein | 1e-146 | 47 |
