Gene Information

Name : rph (Cthe_0188)
Accession : YP_001036622.1
Strain : Clostridium thermocellum ATCC 27405
Genome accession: NC_009012
Putative virulence/resistance : Unknown
Product : ribonuclease PH
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0689
EC number : 2.7.7.56
Position : 226792 - 227583 bp
Length : 792 bp
Strand : +
Note : RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs

DNA sequence :
ATGTTGAGAATTGATGGAAGAGGCCAGTCTGATTTAAGACCGGTAAAAATAACGCGAAACTATATCAAGCACGCCGAGGG
CTCGGTTTTGATTGAGATGGGGGATACAAAGGTAATTTGTACGGCCACTGTGGACGACAAAGTGCCTCCTTTTAAGAAAA
ACACCGGAGAAGGATGGGTTACCGCGGAATATTCAATGCTGCCGAGGGCTACTGCGGCCCGTAATCCAAGAGATATAAGC
AAACTGAAGCTCAGCGGAAGAAGCCAGGAAATACAAAGGCTTATAGGAAGAGCACTTCGCTCGGTGGTGAATTTGAACCT
TTTGGGAGAGAGGGAAATTATAATAGACTGTGACGTTATTCAGGCGGACGGCGGCACAAGAACCGCCTCGATTACCGGCG
GTTTTGTCGCTTTGGTGGATGCCTGCAAGAAACTTGTGGATGACGGCATAATTGAAAAAATACCGGTGACCGACTTTTTG
GCAGCGGTAAGTGTCGGTATTGTAGACGGCGAGGAAATGCTTGATTTGTGCTACATGGAGGATTCGAATGCTGCCACTGA
CATGAATGTCGTGATGACATCAAAAGGCGAATTTATTGAGATTCAGGCTACCGGTGAGCAATTACCTTTCAAAAAAGAGC
AGTTTGACAAACTTTTAAGTTTTGCGGAAAAAGGTATAAGTCAGTTGATTGAAATACAAAAAGATGCTTTGGGTCAGGTA
GCAAGTGAGGTTGGGAGAGTTACGAAAGATGAGAAAATTTGTAATTGCAACGAAGAACAAGGGCAAGCTTAA

Protein sequence :
MLRIDGRGQSDLRPVKITRNYIKHAEGSVLIEMGDTKVICTATVDDKVPPFKKNTGEGWVTAEYSMLPRATAARNPRDIS
KLKLSGRSQEIQRLIGRALRSVVNLNLLGEREIIIDCDVIQADGGTRTASITGGFVALVDACKKLVDDGIIEKIPVTDFL
AAVSVGIVDGEEMLDLCYMEDSNAATDMNVVMTSKGEFIEIQATGEQLPFKKEQFDKLLSFAEKGISQLIEIQKDALGQV
ASEVGRVTKDEKICNCNEEQGQA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
rph YP_001800860.1 ribonuclease PH Not tested Not named Protein 5e-60 55