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Name : rkpS (RSP_3839) Accession : REF_jgi:RSP_3839 Strain : Genome accession: NC_009007 Putative virulence/resistance : Virulence Product : ABC polysaccharide export transporter, ATPase subunit Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1134 EC number : - Position : 1856 - 2677 bp Length : 822 bp Strand : + Note : Citation: Finan, T. M. et. al. (2001) Proc. Natl.Acad. Sci. USA 98: 9889-9894. DNA sequence : ATGATCGAGCTGCGCAACGTCTCGAAGAGCTACGTCCTGAACGGGACGCGCAAGGTGGTGGCGCGCGACCTGAACTTCAC CTTCCCCTCGGGCGAGAGCGTGGGGCTTCTGGGGCGCAACGGGGCGGGCAAGTCGAGCCTTCTGCGGATGCTCGCGGGCA CCATGCTGCCCGACACGGGCGAGATCCTTTCCAGCGGCACGATCTCCTGGCCGGTGGGCTTCTCGGGCAGCTTCCACCCC GAGCTCACCGGGGCGCAGAACGTGCGCTTCGTGGCCCGCCTCTACGGCGTCGATACCGAGGCGATGATCGCCTTCGTGCG CGACTTCGCCGAGATCGGCCAGCATTTCCACCTGCCGGTGCGCAGCTATTCCTCGGGGATGCGCTCGCGGCTGGCCTTCG GCATCTCGATGGCGGTGCCCTTCGACACCTATCTCATCGACGAGGTGACGGCGGTGGGAGACGCAGCCTTCAGCGCCAAG AGCAACGCGATCCTGCGCGCGCGGCTGGAGGAGAGCGGAGCGGTGATCGTCTCGCACTCCATGCCGCTCTTGAAGAAGCT CTGCCGCTCGGGGGCGGTGCTCCACGACGGGCAGCTCTTCTATTACGAGCGCATCGAACAGGCGATCCGCCACCACGAGA GCATGATGCGCGGCGCCCTGCCGCGCTGGATGCGGGGCGACCTCGACGAGGGCGAGGGCGAAGAGGCGGGTGCCGCCGCC CCCGGCCCCCGGGCCCGCGCCCGGGCCGGTGCGGCGCGGGCCGGGGGCGGGCGGGCCGCAAGGCCCGGCCCGGCTTCCGG GACGAGCGAGCCCCGAGGCTGA Protein sequence : MIELRNVSKSYVLNGTRKVVARDLNFTFPSGESVGLLGRNGAGKSSLLRMLAGTMLPDTGEILSSGTISWPVGFSGSFHP ELTGAQNVRFVARLYGVDTEAMIAFVRDFAEIGQHFHLPVRSYSSGMRSRLAFGISMAVPFDTYLIDEVTAVGDAAFSAK SNAILRARLEESGAVIVSHSMPLLKKLCRSGAVLHDGQLFYYERIEQAIRHHESMMRGALPRWMRGDLDEGEGEEAGAAA PGPRARARAGAARAGGGRAARPGPASGTSEPRG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsT | YP_854396.1 | polysialic acid transport ATP-binding protein KpsT | Not tested | PAI I APEC-O1 | Protein | 2e-44 | 48 |
| kpsT | CAE85223.1 | KpsT protein | Virulence | PAI V 536 | Protein | 2e-45 | 46 |
| ctrD | NP_273138.1 | capsule polysaccharide export ATP-binding protein CtrD | Not tested | IHT-A | Protein | 2e-46 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rkpS | REF_jgi:RSP_3839 | ABC polysaccharide export transporter, ATPase subunit | VFG1449 | Protein | 7e-45 | 48 |
| rkpS | REF_jgi:RSP_3839 | ABC polysaccharide export transporter, ATPase subunit | VFG0258 | Protein | 1e-46 | 44 |
| rkpS | REF_jgi:RSP_3839 | ABC polysaccharide export transporter, ATPase subunit | VFG0696 | Protein | 1e-46 | 43 |
| rkpS | REF_jgi:RSP_3839 | ABC polysaccharide export transporter, ATPase subunit | VFG2563 | Protein | 3e-45 | 41 |
