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Name : clpB (llmg_0986) Accession : YP_001032307.1 Strain : Lactococcus lactis MG1363 Genome accession: NC_009004 Putative virulence/resistance : Unknown Product : ATP-dependent Clp protease Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 948593 - 951196 bp Length : 2604 bp Strand : + Note : High confidence in function and specificity DNA sequence : ATGGACATCGAAAAAATGACAACAACGATGCAAGAAGCACTTGGTTCAGCGCAACAAATTGCGCAAGTTCGTCATCACCA AGTGATTGAAGTTCCACATTTATGGCGAATTTTTGTTCAACCTAATAGTTTTGGGGCGAACTTTTATAAAGATTTAGGGA TTGACCTAGATGACTTTACAAATTTAATTGAAAAAGAAATTGACAAAATTAATTCGGTAGAAGGTTCAAATATTACTTAT GGTCAAAACCTAAGTCCAGATTTGTTCCAAGTATTTACTGAAGCAGACAAAATTGCGCAAAAAATGGGCGATGAATACCT ATCAACTGAGATTATTCTCCTTGCTCTCTTTGAATTAAAACAAAATCCATTGACCGAGTATTTGGTCAGCCATGGACTAA CAAAAGCAAAAGCGCAAGCTGCGATTGAAAAATTACGTGGAGGTGATAAAGTGACCAGTCAAAATGCAGAAGAAACATAC AAAGCACTTGAAAAATATGGGGTGGATCTCGTTGCTCAAGTTAAATCAGGCAATCAAGATCCCGTCATTGGACGTGATGA AGAAATTCGTGATGTCATTCGAGTGCTTTCTCGTAAAACAAAAAACAATCCCGTTCTTATTGGTGAACCTGGGGTTGGTA AAACAGCCATTGTCGAAGGATTGGCACAAAGGATTGTCAGAAAAGACGTTCCTGAAAATCTAAAAGATAAAACAATCTTT TCACTGGATATGGGTGCCTTGATTGCAGGAGCGAAATATCGTGGTGAATTTGAAGAACGTTTGAAAGCAGTCCTTAATGA AGTTAAAAAAGCTGATGGACAAATTATCCTTTTCATTGATGAACTTCATACCATTGTTGGTGCAGGTAAAACAGAAGGTT CAATGGATGCTGGTAACCTTTTGAAACCAATGCTTGCACGTGGTGAACTCCATTTGATTGGGGCAACGACCTTGGATGAA TATCGTAAATACATGGAAACAGATAAAGCACTTGAACGTCGTTTCCAAAAAGTATTGGTCACTGAGCCTACCGTTGAAGA TACGATTTCAATCTTGCGTGGTCTAAAAGAACGTTTTGAAATTCACCATGGGGTGACCATTCATGATAATGCTTTAGTTG CAGCAGCCACATTGTCAAATCGTTATATTACAGACCGTTTCTTACCAGATAAAGCGATCGACTTAATTGATGAAGCCAGT GCAACGATTCGGGTGGAAATGAATTCACTCCCAACTGAACTTGACCAAGCCAATCGTCGCTTGATGCAATTAGAAATTGA AGAAGCAGCCCTCAAAAAAGAACGGGATGATGCTTCTAAGAAACGTCTTGAAATTATACGTGGTGAAATTGCTGAACTTC GAGAAGAAAATAATCAACTCAAAGCCCAATGGGAAGCTGAGAAAAAAGAAGTGGGCAATATTTCTGAAAAACGTAATGAA TTAGAACATGCTCGCCACGAATTGGAAGAAGCCCAAAATGAAGGAAACTTAGAAAAAGCAGCAGCCCTTCGTTATGGTAA AATTCCTGAAATTGAAAAAGAACTCAAAGCTATTGAAGAAAAAGCAAAATCAGATGATTTATCTTTAGTTCAAGAATCAG TCACTGAAGAACAAATCGCCGAAGTGGTTGGACGGATGACTGGTATTCCAATTACCAAATTGGTTGAAGGTGAACGTGAA AAATTACTTCATTTGCCAGAAACACTTCATCAAAGAGTTGTCGGACAAGATGAAGCTGTTGAAGCCGTATCTGATGCCAT TATTCGTGCGCGTGCAGGAATTCAAGACCCTAACCGTCCACTTGGCTCATTCCTCTTCCTTGGACCAACTGGGGTAGGTA AGACCGAACTTGCGAAAGCATTGGCTGAAAATCTCTTTGATTCAGAAGAACATATGGTTCGGATTGACATGAGTGAATAT ATGGAAAAACACAGCGTGTCACGTTTAGTCGGAGCTCCTCCAGGATATGTCGGTTACGATGAAGGAGGCCAATTGACCGA AGCCGTTCGCCGTAATCCTTATACCATCATCTTGCTTGATGAAATCGAAAAAGCACATCCAGATGTCTTCAATATCTTGT TGCAAGTTTTAGATGACGGACGTTTGACCGACTCTAAAGGTGTTCTCGTCGACTTTAAGAATACAGTATTGATTATGACT TCAAATGTCGGTTCTCAATATCTGCTCGATAATGTTGGAGAAAATGGTGAAATTTCTGAAGAAACAACAGAAAATGTGAT GTCGCAACTTCGCGCGCATTTCAAACCAGAATTTTTAAACCGGATTGATGATACCATTCTTTTCAAACCATTGGCGCTTG AAGACATCAAGAACATTATCCTTAAAATGACCAGTCAACTAGCACATCGTCTTGAAGAAATGGAAGTTGAGCTTGAATTG AGTGAAGAAGTAAAAGTTTGGATTGCTGAAAATGCTTATGAACCTGCTTATGGTGCACGCCCACTCAAACGTTACTTGAC AAAAGTCATCGAAAATCCATTAGCTAAGCTGATTATCGGAGGAAAAATTCCACCAAAATCAAAAGTTATTGTAAGGCTTA TAGATAACAAGGTTGACTTTGATGTTCAATCGATTGCTGAATAA Protein sequence : MDIEKMTTTMQEALGSAQQIAQVRHHQVIEVPHLWRIFVQPNSFGANFYKDLGIDLDDFTNLIEKEIDKINSVEGSNITY GQNLSPDLFQVFTEADKIAQKMGDEYLSTEIILLALFELKQNPLTEYLVSHGLTKAKAQAAIEKLRGGDKVTSQNAEETY KALEKYGVDLVAQVKSGNQDPVIGRDEEIRDVIRVLSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLKDKTIF SLDMGALIAGAKYRGEFEERLKAVLNEVKKADGQIILFIDELHTIVGAGKTEGSMDAGNLLKPMLARGELHLIGATTLDE YRKYMETDKALERRFQKVLVTEPTVEDTISILRGLKERFEIHHGVTIHDNALVAAATLSNRYITDRFLPDKAIDLIDEAS ATIRVEMNSLPTELDQANRRLMQLEIEEAALKKERDDASKKRLEIIRGEIAELREENNQLKAQWEAEKKEVGNISEKRNE LEHARHELEEAQNEGNLEKAAALRYGKIPEIEKELKAIEEKAKSDDLSLVQESVTEEQIAEVVGRMTGIPITKLVEGERE KLLHLPETLHQRVVGQDEAVEAVSDAIIRARAGIQDPNRPLGSFLFLGPTGVGKTELAKALAENLFDSEEHMVRIDMSEY MEKHSVSRLVGAPPGYVGYDEGGQLTEAVRRNPYTIILLDEIEKAHPDVFNILLQVLDDGRLTDSKGVLVDFKNTVLIMT SNVGSQYLLDNVGENGEISEETTENVMSQLRAHFKPEFLNRIDDTILFKPLALEDIKNIILKMTSQLAHRLEEMEVELEL SEEVKVWIAENAYEPAYGARPLKRYLTKVIENPLAKLIIGGKIPPKSKVIVRLIDNKVDFDVQSIAE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-102 | 42 |
