Gene Information

Name : sctS (BMA10229_1958)
Accession : YP_001025754.1
Strain :
Genome accession: NC_008835
Putative virulence/resistance : Virulence
Product : type III secretion inner membrane protein SctS
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4794
EC number : -
Position : 2020730 - 2020993 bp
Length : 264 bp
Strand : +
Note : identified by match to protein family HMM PF01313; match to protein family HMM TIGR01403

DNA sequence : 
ATGGAAATCGACGACCTGATCCGGCTCACGTCGCAAGGCATGATGCTGTGTCTCTACATCTCGCTGCCGGTCGTACTCGT
CGCGGCCGCCTCCGGCCTGGCGATCTCGTTCCTGCAGGCGATCACGTCGCTGCAGGAGCAGAGCATCTCGTACGGCGTGA
AGCTCGTCGCGGTGACGGTGACCGTCGCGATCGCCGGGCCGTGGGCGGCCGCCGAGATCCTGCATTTCGCGCAGCAACTG
ATGTCCGCGGCGGTGCCGTCGTGA

Protein sequence : 
MEIDDLIRLTSQGMMLCLYISLPVVLVAAASGLAISFLQAITSLQEQSISYGVKLVAVTVTVAIAGPWAAAEILHFAQQL
MSAAVPS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcS AAP34350.1 HrcS Virulence Hrp PAI Protein 9e-17 54
hrcS YP_362152.1 HrcS protein Virulence Hrp PAI Protein 1e-16 54
hrcS YP_198719.1 hypothetical protein Virulence Hrp PAI Protein 1e-16 54
hrcS NP_640756.1 HrcS protein Virulence Hrp PAI Protein 1e-16 54
hrcS AAD21322.1 HrcS Virulence Hrp PAI Protein 1e-16 54
hrcS BAB07863.1 HrcS Virulence Hrp PAI Protein 9e-17 54
hrcS NP_636599.1 HrcS protein Virulence Hrp PAI Protein 1e-14 53
XC_3017 YP_244085.1 HrcS protein Virulence Hrp PAI Protein 1e-14 53
lscS AAO18039.1 LscS Virulence TTSS locus Protein 4e-09 42
hrcS AAB06006.1 HrcS Virulence Hrp PAI Protein 3e-11 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sctS YP_001025754.1 type III secretion inner membrane protein SctS VFG0395 Protein 1e-09 43
sctS YP_001025754.1 type III secretion inner membrane protein SctS VFG0043 Protein 2e-10 43
sctS YP_001025754.1 type III secretion inner membrane protein SctS VFG0187 Protein 1e-04 42