Gene Information

Name : Mpe_A1169 (Mpe_A1169)
Accession : YP_001020365.1
Strain : Methylibium petroleiphilum PM1
Genome accession: NC_008825
Putative virulence/resistance : Virulence
Product : sigma-54 dependent response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1252577 - 1253959 bp
Length : 1383 bp
Strand : -
Note : -

DNA sequence : 
ATGCCCGCCAGCCCCGCCCTGCCCGCTCCCGCCCCCGGACTCGACGCCTGGCCGCGCGCCTCGGTGCTGCTGGTCGACGA
CGAGCAGGGCATGCGCAACTTCCTCGAGAAGACGCTGGCACCGCGCTGCGGCAACGTGCAGAGCGCTGCCAGCGCCGAGG
AGGCCGACGCGCTGGTGCGCCGGCACCGTTTCGACCTGGTGATCCTCGACATCTCGCTGCCCGGGAAGAGCGGCCTCGCC
TGGCTTCGCGAGCTGCGCGAGCAGGGCTACAGCGGCGAGGTGGTGCTGATCACCGCCTATGCCGATCTCGACACCGCGAT
CGAGGCGCTGCGCGCGGGCGCCTCCGACCTGGTTCTCAAGCCGTTTCGCGTGACGCAGATCCTCAACGCGGTGAAGCACG
GCCTCGACCGCACGCTGCTGAAGCGCGAGAACTGGGTGCTCAAGCACATGATCTCGCAGCGCGGCGAGGGCTTCGACGGC
CTGGTGGGCAGCTCGCCGGCGATGCAGGACCTCAGGCGCGCGCTGCAGCGCGCCGCGCCGGTGGCCAGCACCGTGCTGCT
GTCGGGCGAATCGGGCACCGGCAAGGAGCTGGCGGCGATCGCGCTGCATCGCCACAGCCCGCGCGCACCGGAACCCTTCG
TGCCGGTCAACTGCGCGAGCCTCGCGCCCGAGCGCATCGAGAGCGAGCTGTTCGGCCATGCCCAGGGTGCCTTCACCGGC
GCGACGCACGGCCGCGACGGGCTGTTCTATTACGCCCAGGGCGGCACGCTGTTCCTCGACGAGATCGCCGAACTGCCGCT
GGCCCAGCAGGCTGCACTGCTGCGCGTGCTGGAGGACCACCGCATCCGTCCGGTCGGCAGCGAGCAGCAGATCCCGGTCG
ACGTGCGCATCGTCGCCGCCACCAACCGGCGGCTGGCCGACGAGGTGGCCGCCGGGCGCTTCCGCAAGGACCTGTACTAC
CGGCTGCAGGTGGTCGAGATCGGCCTGCCGCCGCTGCGCGAGCACAAGGACGACATCGCCGAGCTGGTGGCGCATTTCAT
CGCCACGCTGGCGCCGCATCTCGGCGTCGAGCCGATCGCCGTCAGCCCGGCCGAGATGGCCTACCTGCAGCAGTACGACT
GGCCCGGCAACGTGCGCGAGCTGCGCAACCTGGTGGAGCGCTCGATGATCCTGGGCGCGCTCAACGTGTCAGCGCTCTAC
CCCGGCGGTACTACGTCGCGCACCGGCGCGAGCGCCGGCCCGACCGACCTGCAGACGCTGGAGAAGCAGCACATCCTCGC
GGTGCTGGAATCGGTGCAGGGCGACAAGACGCGCGCGGCTGAGTTGCTGGGCATCTCGCGCCGCACGCTGGAGCGGCGCT
GCGCCGAATGGCTAGTCGCTTGA

Protein sequence : 
MPASPALPAPAPGLDAWPRASVLLVDDEQGMRNFLEKTLAPRCGNVQSAASAEEADALVRRHRFDLVILDISLPGKSGLA
WLRELREQGYSGEVVLITAYADLDTAIEALRAGASDLVLKPFRVTQILNAVKHGLDRTLLKRENWVLKHMISQRGEGFDG
LVGSSPAMQDLRRALQRAAPVASTVLLSGESGTGKELAAIALHRHSPRAPEPFVPVNCASLAPERIESELFGHAQGAFTG
ATHGRDGLFYYAQGGTLFLDEIAELPLAQQAALLRVLEDHRIRPVGSEQQIPVDVRIVAATNRRLADEVAAGRFRKDLYY
RLQVVEIGLPPLREHKDDIAELVAHFIATLAPHLGVEPIAVSPAEMAYLQQYDWPGNVRELRNLVERSMILGALNVSALY
PGGTTSRTGASAGPTDLQTLEKQHILAVLESVQGDKTRAAELLGISRRTLERRCAEWLVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-59 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-59 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mpe_A1169 YP_001020365.1 sigma-54 dependent response regulator BAC0467 Protein 3e-66 43
Mpe_A1169 YP_001020365.1 sigma-54 dependent response regulator BAC0089 Protein 7e-68 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mpe_A1169 YP_001020365.1 sigma-54 dependent response regulator VFG1214 Protein 4e-63 43
Mpe_A1169 YP_001020365.1 sigma-54 dependent response regulator VFG1249 Protein 9e-56 43
Mpe_A1169 YP_001020365.1 sigma-54 dependent response regulator VFG0116 Protein 7e-51 41