Gene Information

Name : Mpe_A1087 (Mpe_A1087)
Accession : YP_001020283.1
Strain : Methylibium petroleiphilum PM1
Genome accession: NC_008825
Putative virulence/resistance : Unknown
Product : prophage CP4-like integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 1161610 - 1162818 bp
Length : 1209 bp
Strand : +
Note : -

DNA sequence :
ATGAAGCTGACTGACTTGAAACTGCGGACGCTGACTCAGTCGGGAAAGCACTTCGATGGCGGCGGGCTCTACCTGGAGGT
GACGGCCGCGGGCGGTCGTTACTGGCGCATGAAGTACCGCCATGGTGGGAAAGAGAAGCGTCTGGCGTTCGGCGTTTATC
CAGAGGTCACGCTGCGTGCCGCGCGCGATCGCCGCGACGAAGCCCGCAGGGTGCTCGACCAGGGCGGCGATCCGGGCGAG
CTGCGCAAGGCAGCCAAGGCGCAGGCCGCGCACGAGGCGTCCAACACGTTCGAGGCCGTGGCGAGGGACTGGCTCACGCA
CCAGGCCGATAGCTGGGAGGCCGTCACCCTGGCTCGCATCAAGGCGGCTTTCAAGGCGGACGTGTTCCCGCAGCTCGGCG
CGCGGCCCATGGCGCAGATCAAGCCGCGCGAGGTGGCGACCGTCGTCAAGGCGATCGAGGCGCGTGGAGCTGGCGACATG
GCGGCGCGCGTGCTGCAGCGGATCCGGGCCGTCTTCCGATTCGCCGTGGTGCATGAGCGCATCGACTCCAATCCGATGCT
TGACCTGCAGCCCGGCGAGCTGCTGAAGCCGCGCCAGGTGCGGCACCGCGCCGCGCTGGCCGATCGTGATCTGCCGGTGT
TTCTGGAGAAGCTGGCGGCCTATGACGGCGACGTATCCACCTCGGCAGCCCTGCGACTGCTGATGCTCACCGCCGTCCGA
CCTGGCGAGCTGCGCGGCGCGCGGTGGGACGAGATCGACATGGATGCAGCCGAGTGGCGCATTCCAGCCGAGCGCATGAA
GATGCGCTCCCCTCACGTGGTTCCGCTGTCTCGGCAAGCGCTCGATGTGCTCCAGTTGATGCAGCCGCTCAGCGGCGAGC
GCGAGCTGGTGTTCCCAAGTCCCTACTACCCGGGCAAGCCGCTGAGCGAAAACACGCTGAACAGTGCGCTGGCACGCATG
GGCTACAAGGGCCTCGCCACGGCACATGGCTTCCGGGCGCTGTTCTCGACGGTGGCCAATGAGTCGGGCCATTCACCCGA
CGTGATCGAGCGCCAGCTCGCGCACGTGGAGCGCAATGCGGTGCGAGCCGCCTATCACCGCTCGACCTACCTGAAGGATC
GTGCGCAGCTAATGCAGTGGTGGGCCGACTACCTTGATGGTCGACGCAGCGGCAAGGTGGTCCCGCTGTCATCTGCTCGC
GTGGCCTGA

Protein sequence :
MKLTDLKLRTLTQSGKHFDGGGLYLEVTAAGGRYWRMKYRHGGKEKRLAFGVYPEVTLRAARDRRDEARRVLDQGGDPGE
LRKAAKAQAAHEASNTFEAVARDWLTHQADSWEAVTLARIKAAFKADVFPQLGARPMAQIKPREVATVVKAIEARGAGDM
AARVLQRIRAVFRFAVVHERIDSNPMLDLQPGELLKPRQVRHRAALADRDLPVFLEKLAAYDGDVSTSAALRLLMLTAVR
PGELRGARWDEIDMDAAEWRIPAERMKMRSPHVVPLSRQALDVLQLMQPLSGERELVFPSPYYPGKPLSENTLNSALARM
GYKGLATAHGFRALFSTVANESGHSPDVIERQLAHVERNAVRAAYHRSTYLKDRAQLMQWWADYLDGRRSGKVVPLSSAR
VA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-77 46
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-77 46
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-77 46
int ACU09430.1 integrase Not tested LEE Protein 1e-77 46
int CAC39282.1 integrase Not tested LPA Protein 9e-79 46
int AAD44730.1 Int Not tested SHI-2 Protein 3e-78 46
aec33 AAW51716.1 Int Not tested AGI-3 Protein 1e-78 46
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 4e-77 45
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 3e-77 45
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 4e-77 45
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-66 44
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 1e-73 44
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-73 44
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-66 43
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-66 43
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 1e-64 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 7e-65 42
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 9e-65 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 2e-63 42
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 1e-64 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-64 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-64 42
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 4e-64 42
int CAC81896.1 integrase Not tested LEE II Protein 3e-60 42
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-63 42
int AAL51028.1 CP4-like integrase Not tested LEE Protein 4e-64 42
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-64 42
int-phe AAL60261.1 Int-phe Not tested LEE Protein 4e-64 42
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-64 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 2e-63 42
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 6e-63 41
int AAK00456.1 Int Not tested SHI-1 Protein 2e-60 41
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 3e-61 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 3e-64 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 3e-64 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 1e-63 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 3e-63 41
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-59 41
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-59 41
intA AAB00935.1 integrase A Not tested vap locus Protein 8e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mpe_A1087 YP_001020283.1 prophage CP4-like integrase VFG0783 Protein 7e-78 46
Mpe_A1087 YP_001020283.1 prophage CP4-like integrase VFG0598 Protein 2e-77 45
Mpe_A1087 YP_001020283.1 prophage CP4-like integrase VFG1693 Protein 6e-65 42
Mpe_A1087 YP_001020283.1 prophage CP4-like integrase VFG1536 Protein 2e-61 41
Mpe_A1087 YP_001020283.1 prophage CP4-like integrase VFG0626 Protein 1e-64 41