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Name : smpB (NATL1_20681) Accession : YP_001015888.1 Strain : Prochlorococcus marinus NATL1A Genome accession: NC_008819 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 1713081 - 1713578 bp Length : 498 bp Strand : + Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca DNA sequence : ATGAGCAAAAAAGGAAAGAAAAAATCCAAAAACAATTCCTCAGTTGATGGAAATCGTCGCTTAGCAGAAAATCGACAAGC AAGATATGAATATGAAATCCTAGAAACACTTGAAACTGGATTAGAGCTTCTTGGAACAGAAGTTAAATCAATTAGAGCTG GAAAAGTAAATTTAAAAGATGGATTTTGCTTAATCAAAAAAGATCAAATTCAACTTCATAATGTTCATATATCGCCTCAT AATCATGCCGGTAAATTTTTCAATCACGAACCTCTGAGAATAAAAAGACTTCTTGCACATCGAAAAGAAATCGAGAAATT AAAAATAAGTTTAGAGAGAAAAGGTTTAACAATAATCCCTTTAAGTCTTTATCTAAAAGGCTCATGGATCAAATTAAAAA TAGGAGTCGGTAAAGGAAGAAAGACTCATGACAAAAGAGATCGAGAGAAGATTAATGACTCCAAAAGAGATGTAGCTAAT GCTCTAAAACGTTTTTAA Protein sequence : MSKKGKKKSKNNSSVDGNRRLAENRQARYEYEILETLETGLELLGTEVKSIRAGKVNLKDGFCLIKKDQIQLHNVHISPH NHAGKFFNHEPLRIKRLLAHRKEIEKLKISLERKGLTIIPLSLYLKGSWIKLKIGVGKGRKTHDKRDREKINDSKRDVAN ALKRF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 8e-20 | 47 |
