Gene Information

Name : tnpB (YE0832)
Accession : YP_001005170.1
Strain : Yersinia enterocolitica 8081
Genome accession: NC_008800
Putative virulence/resistance : Unknown
Product : IS1329 transposase B
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 957883 - 958632 bp
Length : 750 bp
Strand : +
Note : Previously sequenced as Yersinia enterocolitica transposase B TnpB SWALL:Q9RIG3 (EMBL:AJ251581) (249 aa) fasta scores: E(): 2.3e-104, 99.59 38d in 249 aa. Also similar to Xanthomonas axonopodis pv. citri str. 306 ISxac3 transposase Xac0342 SWALL:AAM35234

DNA sequence :
ATGATCAAGCCCGATGTTCTGATGTTGCACGCGGCGGCTAAGCATGTTCACGCTGAAATGGATGCCACATATGGCAGCCG
GCGCATGTGCATCGAGTTACGGGAGCAAGGTTTTAACGTGGGCAGATACCGCGTTCGGCAGATAATGAAAAACTTATTAC
TGGTAGCTAAACGACCTGGGCGTCATCGCTATCCACGCGGTGGAAAACCCGCTGTCGTGGCCGCTAATCTGTTGAACCGG
CAGTTTAATCCAGAGACATTGAATACCTGGTGGTCAGGTGATATTACCTATCTGCATACCGCTCAGGGCTGGTTATATCT
GGCTATCGTGATGGACTTATGTTCAAGAAAAATAGTGAGTTGGGCCTTCTCAGACAAACCGGACAGCGACTTGACTGTCC
GGGCCTTAAGGCTGGCCGTAAATAAACGCCGACCCACAGGGTCAGTGGTGTTCCATAGCGATCAAGGGGCGCAATATACC
AGCGCGCAGTTCCAGTCCTGCCAGCAAGAACTGGATGTTACAGGTAGTATGAGTCGAAAAGGTAACTGCCTGGATAATGC
TGTTACGGAAAGGTTTTTCCGCAGCCTGAAAGCAGAGAGGGTTAACTATCGTCGTTATGAAACCCGAAGTCAGGGTATCG
CTGATGTTATCGATTATATCGACAGCTTTTATAATCTGAAAAGGCGGCATTATCGGCTGGGAAATATATCGCCGGATGAA
TATGAACGCCGATTACAACAATGTGCCTAA

Protein sequence :
MIKPDVLMLHAAAKHVHAEMDATYGSRRMCIELREQGFNVGRYRVRQIMKNLLLVAKRPGRHRYPRGGKPAVVAANLLNR
QFNPETLNTWWSGDITYLHTAQGWLYLAIVMDLCSRKIVSWAFSDKPDSDLTVRALRLAVNKRRPTGSVVFHSDQGAQYT
SAQFQSCQQELDVTGSMSRKGNCLDNAVTERFFRSLKAERVNYRRYETRSQGIADVIDYIDSFYNLKRRHYRLGNISPDE
YERRLQQCA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 9e-115 99
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-115 99
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 1e-36 45
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 1e-36 45
unnamed CAI43898.1 putative transposase Not tested LEE Protein 1e-36 41
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 1e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpB YP_001005170.1 IS1329 transposase B VFG1484 Protein 7e-37 45