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Name : hofC (YE0689) Accession : YP_001005037.1 Strain : Yersinia enterocolitica 8081 Genome accession: NC_008800 Putative virulence/resistance : Virulence Product : hypothetical protein Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 793751 - 795205 bp Length : 1455 bp Strand : - Note : Similar to Yersinia pestis putative type II secretion system protein HofB or Ypo3426 SWALL:Q8ZBI4 (EMBL:AJ414157) (512 aa) fasta scores: E(): 2.8e-109, 71 id in 500 aa and to Escherichia coli protein transport protein HofB or b0107 SWALL:HOFB_ECOLI (SWALL DNA sequence : ATGGAATGTCCACACGAGACAATAAATGATGAATTACACACCATTTGCCGCCGTTATAGATCAATAGCCTTAAAACTTGA TGGCCAGAGCCTGACCATAGCTTCGTCTCACCCAGTCAATGAGGCGTTGCTAACTGCACTGCGTTTTGCGTGTGGCCGTA AAATCAAGGTGGAATACTGGCCGGAGGCCAGAATTGAGCAATCACTCAATTTGAGCCCATCAACGCAACAGCACTTAGAA ACTAACGTACCTATAAAGGGGGCTGATGACACATTACTTGATAATGAAAACGATACACCTGTTATTCAATTTATAACGCA GACACTCAGGTTGGCGATTCAGAAACGTGCATCAGATATCCATTTTGAACCTTATCAATATCACTACCGCATTCGTCTAA GAATTGATGGCGTATTACATGAATCCCCATCGCCTACAGTTGAGCTATCTCGTCGTATTAGCAGTTGCCTGAAGGTTATG TCTAAACTGAATATTGCGGAAAAACGGTTAGCGCAAGATGGTCAGTTAGCACTGATATTAGACGGTATTCGCTACTCAAT GAGAATAGCGACCCTCCCCGTGCAATATGGTGAAAAAGTCGTGCTGCGAATTCTCAATATGAAGCAGCAGCCTACTCTGG AAAAACTGGGACTTACAACAGTGGCCCACCAGCAATTAACTCAAGCGCTATCAGCGCCTCAGGGGTTGGTTCTGGTTACT GGGCCAACAGGAAGTGGTAAGACAGTAACTCTCTATTGCAGCCTGGAGCAGCTCAATCAGGGACAAATAAACATCTGTAG CGTTGAAGATCCTATTGAGATCCAGGTTGACGGTATAAATCAAACACAGACCAACAGTAAAATTGGGCTGGATTTTTCTA ATGTATTGCGTGCCATGCTGCGTCAGGATCCTGATGTCATTATGCTCGGTGAGATTCGTGATAATGAAACCGCAGAAATA GCAGTTAAAGCAGCACTAACGGGGCATCTGGTTCTCTCAACCTTGCATACCAACTCCACAGCTGAAACACTGATACGCCT GACACACATGGGCGTAGAGCGTCACTTAATTGCTTCCAGCCTAATATTAGTTATCGCCCAACGATTAGTCCGAAAATTGT GCCTGCATTGTCGTCAGGCGTCATCAGTCCCTTTCCTGACACCACCAGATATATGGGCAAGTCCACTGCAACATTATCTT GCCGTTGGTTGTGAACATTGCTGTGCCGGATATTATGGTCGAACGGGAATTTACGAAATGTTAAATGTCACCCCGCCAAT CCAACAAGCTTTACTTAATAATGTCAGCCCAGCAGAACTCACCAGGATTGCGCAAGAACAAAAACAAGTCACATTACTTT CGGCGGGTCTGGCATTGGTCGAAAACGGTATGACCACTCTCAGAGAAATTAATCGTGTTGTGGGGCTGCAAATACAAGTT GAGGCAATACCGTGA Protein sequence : MECPHETINDELHTICRRYRSIALKLDGQSLTIASSHPVNEALLTALRFACGRKIKVEYWPEARIEQSLNLSPSTQQHLE TNVPIKGADDTLLDNENDTPVIQFITQTLRLAIQKRASDIHFEPYQYHYRIRLRIDGVLHESPSPTVELSRRISSCLKVM SKLNIAEKRLAQDGQLALILDGIRYSMRIATLPVQYGEKVVLRILNMKQQPTLEKLGLTTVAHQQLTQALSAPQGLVLVT GPTGSGKTVTLYCSLEQLNQGQINICSVEDPIEIQVDGINQTQTNSKIGLDFSNVLRAMLRQDPDVIMLGEIRDNETAEI AVKAALTGHLVLSTLHTNSTAETLIRLTHMGVERHLIASSLILVIAQRLVRKLCLHCRQASSVPFLTPPDIWASPLQHYL AVGCEHCCAGYYGRTGIYEMLNVTPPIQQALLNNVSPAELTRIAQEQKQVTLLSAGLALVENGMTTLREINRVVGLQIQV EAIP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 3e-76 | 47 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-76 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofC | YP_001005037.1 | hypothetical protein | VFG2048 | Protein | 6e-77 | 47 |
| hofC | YP_001005037.1 | hypothetical protein | VFG1876 | Protein | 3e-70 | 47 |
| hofC | YP_001005037.1 | hypothetical protein | VFG1880 | Protein | 1e-84 | 46 |
| hofC | YP_001005037.1 | hypothetical protein | VFG2426 | Protein | 2e-74 | 45 |
| hofC | YP_001005037.1 | hypothetical protein | VFG0182 | Protein | 2e-71 | 45 |
| hofC | YP_001005037.1 | hypothetical protein | VFG0112 | Protein | 3e-87 | 42 |
