Gene Information

Name : basR (YE0423)
Accession : YP_001004793.1
Strain : Yersinia enterocolitica 8081
Genome accession: NC_008800
Putative virulence/resistance : Virulence
Product : DNA-binding transcriptional regulator BasR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 491725 - 492384 bp
Length : 660 bp
Strand : -
Note : response regulator in two-component regulatory system with BasS

DNA sequence : 
ATGAAACTACTGATTGTCGAAGATGATGAACTACTGCAACGAGGGATAGCTATGGCGCTGACCAGCGGGGGCTATGCCTG
CGACTGTGCTGGCACCGCGGCACAAGCGCATAGTTTGTTACTCTCCAGTCAGTACAGTATGGTTATTCTCGATCTCGGCT
TACCGGATCAAGATGGCGCAGTATTGCTGCGTCAATGGCGACGCCAGCACATCACGCTACCAGTGCTGATCCTCACTGCT
CGTGATGCCCTTGAGGATAGAGTTGATGGGCTGGATGCCGGTGCTGACGATTATCTGATAAAGCCTTTCGCTCTGGCAGA
ATTATTGGCCCGTGTACGAGCGCTTATCCGCCGCTATCAAGGGCAAAGTGACAATCTGATACAGCAAGATGACCTGAGCC
TCAACCTATCAACACAGCAAGTGTGTTTGCAGGGTCAGGCGCTGGAAGTCACACCGAAAGAATTTGCGATTTTGTCGCGT
TTAATCATGCGAGCGGGTCAAACCGTCAATCGTGAGCTGTTGCAACAAGATCTGTATACCTGGAATGACGATCTTGGCTC
CAATACGTTGGAAGTACATATCCACAATCTGCGACGTAAATTGGGCAAAGATCGCATCCGAACAGTTCGGGGTATTGGCT
ATCGGCTGGAAGCACCATGA

Protein sequence : 
MKLLIVEDDELLQRGIAMALTSGGYACDCAGTAAQAHSLLLSSQYSMVILDLGLPDQDGAVLLRQWRRQHITLPVLILTA
RDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQGQSDNLIQQDDLSLNLSTQQVCLQGQALEVTPKEFAILSR
LIMRAGQTVNRELLQQDLYTWNDDLGSNTLEVHIHNLRRKLGKDRIRTVRGIGYRLEAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 7e-34 47
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-24 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-23 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_001004793.1 DNA-binding transcriptional regulator BasR BAC0487 Protein 6e-56 67
basR YP_001004793.1 DNA-binding transcriptional regulator BasR CP001918.1.gene5135. Protein 3e-14 41
basR YP_001004793.1 DNA-binding transcriptional regulator BasR CP001138.1.gene4273. Protein 3e-14 41
basR YP_001004793.1 DNA-binding transcriptional regulator BasR BAC0533 Protein 6e-14 41
basR YP_001004793.1 DNA-binding transcriptional regulator BasR CP000647.1.gene4257. Protein 6e-14 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_001004793.1 DNA-binding transcriptional regulator BasR VFG0473 Protein 3e-49 57
basR YP_001004793.1 DNA-binding transcriptional regulator BasR VFG0596 Protein 7e-25 42