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Name : gabD (YE3793) Accession : YP_001007944.1 Strain : Yersinia enterocolitica 8081 Genome accession: NC_008800 Putative virulence/resistance : Unknown Product : succinate-semialdehyde dehydrogenase Function : - COG functional category : C : Energy production and conversion COG ID : COG1012 EC number : 1.2.1.16 Position : 4135296 - 4136789 bp Length : 1494 bp Strand : - Note : NADP+; Similar to Escherichia coli succinate-semialdehyde dehydrogenase [NADP+] GabD or b2661 SWALL:GABD_ECOLI (SWALL:P25526) (482 aa) fasta scores: E(): 3.2e-105,56.19 38d in 468 aa, and to Salmonella typhimurium succinate-semialdehyde dehydrogenase i, N DNA sequence : ATGTCAGCACATAATCCATCAGACAACCCATCACGCAATCCATTACAACCTCAGCAACACAGCGACGGTGTTTATCATAT CGGCTACTTCGTTGGCGGCACCTGGCATCAGGCGCAGGATACTTTCGAGGTCCGCAATCCTGCCACCGGTGAATTGGTGG CAAAAGTGGCTAAATCCGGTAAACATGAAACCGAGGCCGCGATTAAAGCCGCCAGTAAAGCCTTTCCTGCCTGGCGCAAA ACCCCGGCAAAACAGCGCGCAGAAATTTTACAGCGCTGGTATTTGTTGATAATGGAACATCAACAGTCATTGGCCGAGAT AATGGTTTCTGAACAAGGTAAACCATTGAAAGAAGCATTAGGTGAGGTTGCTTATGCCGCCAGCTTTATTCAATGGTTTA GCGAGCAGGCTAAGCGCGCCAATGGCGAAATCATTCCGCCAGCCAAAGAAGGTGCCCGCATTCTGGCGACCCGTGAACCG GTCGGTGTGGTTGCAGCTATCACGCCGTGGAACTTCCCGCTGGCGATGCTCACCCGCAAACTTGGGCCAGCACTGGCGGC AGGTTGTACCGGCCTGATTAAACCGGCCAATAACACACCGTTATCCGCCTTTGCTTTACTGGCATTGGCTGAGCAGGCGG GGGTACCTGCAGGGGTGCTCAATGGTGTTGCCGGTGATACCCATGCTATCAGCGATGCCATCATGGCCAGCCCTGAAGTG CGCAAAATCTCCTTTACCGGTTCGACCGAAGTGGGTAAAACCTTGATGCGTAACGCCGCCGCGACCATGAAGAAAATCTC CATGGAGTTAGGTGGGAATGCACCTTATATCGTATTTGATGATGCCGATTTAGATGCTGCTATCGCGGGAGCCATGGCCT GTAAATTCCGCAATGCCGGGCAAGTGTGTGTTTGCGTCAATCGCTTCTATATTCAGGATAGTGTTTACGACGAGTTTGTT ACCCGCCTGGCCGCTGAGGTTAAAAAACTGAAAGTCGGCAATGGCATGGATAAAGACGTCAACATGGGGCCGCTGATTAA CCTGGCCGGTCTGGAGAAAGTGGAAGACCACGTCAAAGATGCGCTTGAGAAAGGTGGGCGATTATTGGCCGGTGGCCGTC GCCACGCCTTGGGCGGTAATTTCTTCCAACCGACTGTTATTGCTGATGCCACCGAACAAATGAAAGTAGCTTCTGAAGAG ACCTTTGGCCCACTGGCGGCTTGTTTTCGTTTTAAAACGGAAGAAGAAGTCATTCAGCGGGCGAATAATACTCCATTTGG ATTGGCAGCTTATTTCTATACTCAGAACTTGCAACGGGTATTCCGGGTTTCAGACGCACTGGAAAGCGGTATGATTGGTG TGAACGAAAGCTCGGTGTCAACTGAGCTGGCACCTTTCGGTGGTGTTAAAGAATCTGGTTTGGGTCGTGAAGGCTCAGTG CTCGGGTTGGATGAGTTTATGGAAGTGAAAACCTTGCATCTGGGTAATTTATAA Protein sequence : MSAHNPSDNPSRNPLQPQQHSDGVYHIGYFVGGTWHQAQDTFEVRNPATGELVAKVAKSGKHETEAAIKAASKAFPAWRK TPAKQRAEILQRWYLLIMEHQQSLAEIMVSEQGKPLKEALGEVAYAASFIQWFSEQAKRANGEIIPPAKEGARILATREP VGVVAAITPWNFPLAMLTRKLGPALAAGCTGLIKPANNTPLSAFALLALAEQAGVPAGVLNGVAGDTHAISDAIMASPEV RKISFTGSTEVGKTLMRNAAATMKKISMELGGNAPYIVFDDADLDAAIAGAMACKFRNAGQVCVCVNRFYIQDSVYDEFV TRLAAEVKKLKVGNGMDKDVNMGPLINLAGLEKVEDHVKDALEKGGRLLAGGRRHALGGNFFQPTVIADATEQMKVASEE TFGPLAACFRFKTEEEVIQRANNTPFGLAAYFYTQNLQRVFRVSDALESGMIGVNESSVSTELAPFGGVKESGLGREGSV LGLDEFMEVKTLHLGNL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| orf17 | AAO17183.1 | Orf17 | Not tested | tcd island | Protein | 2e-122 | 58 |
