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Name : ysaV (YE3546) Accession : YP_001007704.1 Strain : Yersinia enterocolitica 8081 Genome accession: NC_008800 Putative virulence/resistance : Virulence Product : type III secretion system apparatus protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 3862139 - 3864211 bp Length : 2073 bp Strand : - Note : Previously sequenced as: Yersinia enterocolitica YsaV SWALL:O30436 (EMBL:AF005744) (690 aa) fasta scores: E(): 0, 100 38d in 690 aa. Also similar to Salmonella typhimurium, and Salmonella typhi invasion protein InvA inva or stm2896 or sty3019 SWALL:INVA_S DNA sequence : ATGAATAAAATTACCGGACTATTGTTAAATATTCGCAATCGTCCTGAACTGTTGGTATTAGTCATCATGGTCATGGTTAT TGCCATGCTGATTATACCTTTGCCGACGATTTTAGTAGATCTGTTAATTGGCCTGAATATTATGATTTCAGTGCTGATTT TTATGGGATCATTTTATATTACACGGGTGTTGGACTTCCGGTCATTTCCCTCAATTTTATTGATTACTACGCTATTCCGA TTAGCGTTATCGATCAGTACCAGCCGTCTTATTTTGCTGGAAGCTGATGCTGGCGACATTATTGCCACCTTTGGCGAGTT TGTTATTCAGGACAATCTGGTGGTTGGGATGGTGGTATTTGCCATCGTGACCATTGTGCAGTTTATCGTGATTACCAAAG GTTCTGAACGTATTGCCGAAGTTGCGGCGCGTTTCTCACTTGATGCGATGCCAGGTAAACAGATGAGCATTGACGCTGAT TTGCGTGCTGGGGTGATTGATGAGGCAACAGTAAAAGAGAAACGTAATGATATGGAGAACGAGAGCCAGTTATACGGCTC TTTTGATGGGGCGATGAAATTCATCAAAGGTGATGCTATCGCTGGGATCATCATTATTTTTGTCAATCTGATTGGTGGTA TTTCCGTCGGAATGGCGCAATTGGGTATGGACATGCCTACGGCACTGAATACCTTCACCCTGCTGACCATTGGTGATGGC TTGGTAGCACAAATTCCGGCTCTGCTTATCTCTATCAGTGCCGGCTTTATTGTGACTCGCGTGGGCGGCAATGATAAAAA CCTTGGTGAAAATATTGTCTCTGAGCTGTTTGCCAAAGATTTCACTATTATGATCACCGCGATCATTGTTTGTAGCATTG GTTTTCTGCCCGGGTTTCCTACGCCAATTTTCCTGTTCTTATCCGGTTTAATGGTAGCGCTGCTGTGGTATCGCCATCAT CAGAAGCGCAAGGAGAAGAAACACCTTGCGGGTGATGAACAGAGTGATGCTGAAGTTAGCTCCGAGGTGGCAGAAGGCGA AACTCGACGGGAAAGTCAGGTTTCAGATGATGAGTATGTACCTGAAACACTGCCAATTATTATTTCGGTGAGCCAAAAAC ATAAGGAACTGCTGGAAGAAAATAGTTTTCTATCACGCATCAAGAAAGATATTTTTGTGCGCTATGGCTACCGCATCCCT GATATTGCCATTAACTATTCTCCGGTGGTACCAAGCGACAAAATTATTGTGCTGATTAATGAAGTTCGTGCGGGTGATTA TAATATTTGCTTTGGTGGTTTACGTCTTCTTACGATTAACGATGAACTGGAATATCTGGGGCTGGAATTAACCCGATTTA CTGATGAGCATGGTGCAGTCAGTACCTGGATCGCCAGTAAACATACTGATGATATTAAACAACTGGGTTTAATGGCACGC GATGATATTAGTGAGATTATCGACTGTATCGGAACTTTATTGCTGCATCACATTAATGAGTTCTTTGGGATTCAGGAAAC TAAAAACCTGCTTGACGATCTGGAAAAGAAATACCCTGAATTATTAAAAGAGTGCTATCGCCATGCAACAGTACAAAAGA TAACTGAAGTATTTCAGCGTCTGCTGATGGAAAAGATTTCCATCCGAAATATGAAACTTATTTTGGAAACTTTGGTGCAA TGGGTGCCAAAAGAGAAAGACAGCATGATGCTGGTGGAATATGTCCGTGGCGCGATGGCCCGTTATATCTCATCTCGTTT TGCCACCGATGGGCGTTTGAATGTTCTGATGATTAATGATCAATTTGAAGACATGATTCGCCAAGGGATTCGTCAGGCCT CCGGCGGTAGCTTTATCAGCCTTGATCCGGCAAAAACCGATGACATTATTCAGGCCTTTGCTCAGACAGTAGAAAGCAGT TATCACTCCGTTCGAGATATGAGTGTGCTGGTGCCCGTAGATATTCGTCGTTTTGTGAAAAAAATTCTTGAGAGTCGTTT CCCTGAATTGGAGGTGCTCTCATTTAATGAGATCTCCGAGACAGTGAAAGTGAACGTAATTAAAACCGTGTAA Protein sequence : MNKITGLLLNIRNRPELLVLVIMVMVIAMLIIPLPTILVDLLIGLNIMISVLIFMGSFYITRVLDFRSFPSILLITTLFR LALSISTSRLILLEADAGDIIATFGEFVIQDNLVVGMVVFAIVTIVQFIVITKGSERIAEVAARFSLDAMPGKQMSIDAD LRAGVIDEATVKEKRNDMENESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMAQLGMDMPTALNTFTLLTIGDG LVAQIPALLISISAGFIVTRVGGNDKNLGENIVSELFAKDFTIMITAIIVCSIGFLPGFPTPIFLFLSGLMVALLWYRHH QKRKEKKHLAGDEQSDAEVSSEVAEGETRRESQVSDDEYVPETLPIIISVSQKHKELLEENSFLSRIKKDIFVRYGYRIP DIAINYSPVVPSDKIIVLINEVRAGDYNICFGGLRLLTINDELEYLGLELTRFTDEHGAVSTWIASKHTDDIKQLGLMAR DDISEIIDCIGTLLLHHINEFFGIQETKNLLDDLEKKYPELLKECYRHATVQKITEVFQRLLMEKISIRNMKLILETLVQ WVPKEKDSMMLVEYVRGAMARYISSRFATDGRLNVLMINDQFEDMIRQGIRQASGGSFISLDPAKTDDIIQAFAQTVESS YHSVRDMSVLVPVDIRRFVKKILESRFPELEVLSFNEISETVKVNVIKTV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 3e-174 | 57 |
| invA | NP_461817.1 | needle complex export protein | Virulence | SPI-1 | Protein | 8e-168 | 54 |
| invA | YP_217815.1 | invasion protein | Virulence | SPI-1 | Protein | 8e-168 | 54 |
| invA | NP_457290.1 | possible secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 8e-168 | 54 |
| invA | NP_806499.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 8e-168 | 54 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 8e-148 | 51 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 5e-153 | 51 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 7e-113 | 42 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 1e-103 | 41 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 2e-102 | 41 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 2e-102 | 41 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 5e-103 | 41 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 4e-103 | 41 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 3e-103 | 41 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 3e-103 | 41 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 2e-103 | 41 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 2e-103 | 41 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 4e-103 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ysaV | YP_001007704.1 | type III secretion system apparatus protein | VFG1780 | Protein | 0.0 | 100 |
| ysaV | YP_001007704.1 | type III secretion system apparatus protein | VFG2461 | Protein | 1e-164 | 54 |
| ysaV | YP_001007704.1 | type III secretion system apparatus protein | VFG0557 | Protein | 4e-168 | 54 |
| ysaV | YP_001007704.1 | type III secretion system apparatus protein | VFG1006 | Protein | 5e-156 | 52 |
| ysaV | YP_001007704.1 | type III secretion system apparatus protein | VFG0729 | Protein | 1e-102 | 41 |
| ysaV | YP_001007704.1 | type III secretion system apparatus protein | VFG0064 | Protein | 3e-114 | 41 |
| ysaV | YP_001007704.1 | type III secretion system apparatus protein | VFG0198 | Protein | 3e-107 | 41 |
| ysaV | YP_001007704.1 | type III secretion system apparatus protein | VFG0384 | Protein | 3e-111 | 41 |
