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Name : lysS (YE3374) Accession : YP_001007545.1 Strain : Yersinia enterocolitica 8081 Genome accession: NC_008800 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 3686176 - 3687693 bp Length : 1518 bp Strand : - Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTCAGAGCAAAAACCACAAGTCGCTGAGCAAGCGCAAGAACTCAATAGTGAGTTACAAGCTCGTCGGGAAAAACTGGC AGCACTGCGGGAAAAAGGGATTGCTTTCCCTAATGATTTCCGTCGTGAGCACCTCTCAGACCAGCTACATGCCGAGTACG GCGAAAAAACAAATGAAGAATTAGAAGCGCTGGATATCGAAGTGACTGTTGCTGGCCGTATGATGACTCGCCGTATTATG GGTAAAGCATCATTTGTGACGCTGCAAGATGTCGGTGGCCGTATCCAGCTATACGTTTCCCGCGATGACCTGCCGGAAGG CGTTTATAACGAAGAATTTAAAAAGTGGGATCTCGGCGATATCTTGGGTGCACGCGGCAAGTTGTTCAAAACTAAAACTG GCGAGCTGTCTATCCACTGTAGTGAGTTGCGTTTACTGACCAAAGCATTGCGCCCGCTGCCGGATAAATTCCACGGTCTG GCTGATCAGGAAACCCGCTATCGTCAGCGTTATCTGGATCTAATCGCTAACGACGAATCCCGCAATACATTCAAAGTTCG TTCGCAAGTGATGTCAGGTATTCGCCGCTTCATGGTGGAAAAAGGCTTCATGGAAGTCGAAACTCCTATGATGCAAGTGA TTCCCGGAGGTGCTTCAGCGCGCCCATTCGTGACTCATCACAATGCGCTGGATATCGATATGTACTTGCGTATCGCCCCA GAGTTGTATCTGAAGCGCTTGGTAGTCGGTGGTTTTGAACGAGTGTTCGAAATCAACCGTAACTTCCGTAATGAAGGTGT TTCACCGCGTCATAACCCAGAGTTCACCATGATGGAACTCTATATGGCTTATGCGGATTACAAAGACCTGATAGCGTTGA CCGAAGAGTTATTCCGGACACTGACTGAAACCGTGCTGGGTAGCAGTGTGGTGCAGTATGGTGACCAGACCTTCGATTTT GGTAAGCCTTTTGCCAAATTGACCATGAAAGAAGCTATTTGCAAATATCGTCCAGAAACCAATGTGGCTGATTTGGACGA TATGGATAAAGCAGTAGCTATCGCTGAGTCCTTGGGTATTAAAGTTGAGAAGAGCTGGGGCTTGGGCCGCGTTCAATGCG AAATTTTTGAAGAGACGGCAGAGAGCCACCTGATTCAACCTACCTTCATCACTGAATACCCAGCAGAAGTTTCACCGTTG GCACGTCGTAATGATGATAATCCGTTTATCACTGACCGCTTCGAATTCTTCATCGGTGGCCGTGAAATTGGTAATGGTTT CTCCGAGCTGAATGATGCTGAAGATCAGGCACAGCGCTTTGCTGATCAGGTTAGCGCCAAAGAAGCTGGTGATGATGAAG CGATGTTCTACGACGAAGACTATGTTACTGCACTGGAACATGGCTTGCCGCCGACCGCGGGTCTGGGTATCGGTATCGAC CGTATGGTGATGTTGTTTACCAACAGCCACACCATCCGCGATGTTATCTTGTTCCCAGCGATGCGCCCGGTAAAATAA Protein sequence : MSEQKPQVAEQAQELNSELQARREKLAALREKGIAFPNDFRREHLSDQLHAEYGEKTNEELEALDIEVTVAGRMMTRRIM GKASFVTLQDVGGRIQLYVSRDDLPEGVYNEEFKKWDLGDILGARGKLFKTKTGELSIHCSELRLLTKALRPLPDKFHGL ADQETRYRQRYLDLIANDESRNTFKVRSQVMSGIRRFMVEKGFMEVETPMMQVIPGGASARPFVTHHNALDIDMYLRIAP ELYLKRLVVGGFERVFEINRNFRNEGVSPRHNPEFTMMELYMAYADYKDLIALTEELFRTLTETVLGSSVVQYGDQTFDF GKPFAKLTMKEAICKYRPETNVADLDDMDKAVAIAESLGIKVEKSWGLGRVQCEIFEETAESHLIQPTFITEYPAEVSPL ARRNDDNPFITDRFEFFIGGREIGNGFSELNDAEDQAQRFADQVSAKEAGDDEAMFYDEDYVTALEHGLPPTAGLGIGID RMVMLFTNSHTIRDVILFPAMRPVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 2e-167 | 69 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_001007545.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 1e-167 | 69 |
