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Name : ldcC (YE3267) Accession : YP_001007441.1 Strain : Yersinia enterocolitica 8081 Genome accession: NC_008800 Putative virulence/resistance : Virulence Product : lysine decarboxylase, constitutive Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : 4.1.1.18 Position : 3564089 - 3566230 bp Length : 2142 bp Strand : - Note : Similar to Escherichia coli lysine decarboxylase,constitutive LdcC or LdcH or ldc or b0186 SWALL:DCLZ_ECOLI (SWALL:P52095) (713 aa) fasta scores: E(): 0, 75.88 38d in 709 aa and to Salmonella typhimurium lysine decarboxylase 2, constitutive LdcC or stm023 DNA sequence : ATGAATATCATCGCAATCATGGGGCCGATGGGGGTTTATTATAAAGATGAACCTATTCGAGAGTTGAACGATGCCCTGCT CGCCAGAGGTTTTCAGCTCATCTATCCTAAGAGTCGTGGTGATCTGCTCAAGCTTATTGAGCATAATGCGCGCATTATTG GTGTGATTTTTGATTGGGACCAACACAGTAATGAACTTTGCGCTGAGATTAATGATCTAAACGAATATCTCCCACTTTAT GCATTTATCAATACCACATCGTCACTGGATGTCAGTTTGAATGAAATGCGCATGGCACTTTATTTCTTTGAATATACTCT GAATGCCGCTGAAGATATTGCTCAACATATTGAACAATATACAGCGGAGTATATGGATAGTATTACCCCGCCTTTAACCA AAGCACTGTTTAATTATGTTAAAGAAGGAAAGTATACATTTTGTACTCCTGGACACATGGCGGGAACGGCTTTTCAAAAA AGTCCGGTGGGGAGTTTGTTCTATGATTTCTTTGGCGCTAATACCCTTAAAGCAGATATTTCAATCTCCGTTACTGAACT GGGATCATTATTAGATCATACCGGGCCACATTTGGAGGCCGAGGAATATATTGCCCGCACATTTAATGCCGAACAGAGCT ATATGGTAACGAATGGCACATCGACGGCGAATAAAATCATTGGTATGTACTCATCACCTGCAGGCAGTACGGTACTGATT GACCGAAATTGCCATAAGTCTCTGACGCATCTATTAATGATGAGCGATATTATTCCTGTTTATTTATGTCCTGCGCGAAA TGCTTATGGCATTTTAGGCGGCATCCCACAGCGCGAATTTACTAAAACCTCCATTGAGGCAAAAGTTGCGCAGACTAACA ATGCCAGTTGGCCGGTACATGCAGTAATAACCAACTCGACCTACGATGGCTTGCTCTATAATACGAATTATATTAAGCAG ACATTGGATGTTTCTTCCATTCACTTTGATTCCGCCTGGGTTCCTTATACTAATTTTCATGAAATTTATGAGGGTAAAAG TGGCATGAGTGGCGAGCGAATGGTGGGGAAAGTATTTTATGAAACGCAATCAACCCATAAATTACTGGCCGCATTCTCTC AGGCATCAATGATTCATATTAAAGGTGATTACAATGAAAGCACCTTTAATGAAGCTTACATGATGCACACCACAACCTCC CCTAATTACGGGATTGTTGCTTCGATGGAAACGGCGGCAGCCATGATGCGCGGTAATCCGGGACGGCGCATGATTTTACG TTCTATTGAGCGGGCGATGCATTTTCGCAAAGAAGTGCGCCGATTACGCTCAGAAAGTGATAACTGGTTCTTTGATGTCT GGCAGCCAGAAGATATTGATGAAATAGCCTGTTGGCCACTCCAGCCGGGGCAAAAATGGCATGGTTTTAGTCATGCGGAT GCTGATCATATGTATCTTGATCCGATCAAAGTGACAATTCTGACGCCGGGAATGAGCCACGAAGGAGTACTTGAGGAGGA AGGGATCCCCGCCGCATTGGTAGCAAAGTTTCTGGATGAACGTGGGATCGTGGTAGAAAAAACCGGCCCCTATAATTTGT TATTCTTATTTAGTATCGGTATTGATAAAACTAAGGCAATGAGTTTATTGCGCGGCCTGACCGATTTTAAGCGCGCTTTT GATCTTAATTTGCGGATTAAAAATATGTTGCCAGATCTGTTTGCTGAAGATCCTGATTTTTATCGCCATATGCGTATTCA GGATCTGGCTGCAGGAATTCATAACATGATCCGCCAACATGATTTACCTCGCCTGATGCGCAAGTCATTTGATGTATTGC CAGAGATGAAACTCACGCCTTATAACATGTTCCAACAGCAGATCCGCGGTAATATAGTCGCTTGTGATATGGCTGATTTG ATTGGCAAGGTGGTCGCCAACATGATCTTACCTTATCCACCGGGAGTGCCATTAGTCATGCCGGGTGAAATGATTACCGA AGAGAGCCGTGCAGTATTGGATTTCCTCCTGATGCTTTGTGCTATTGGTGCTCGTTATCCTGGGTTTGAAACGGATATAC ATGGTGCTAAGCGCGATGATGATGGGCGTTACTGGGTCAATATACTCGATACAAAACAATAA Protein sequence : MNIIAIMGPMGVYYKDEPIRELNDALLARGFQLIYPKSRGDLLKLIEHNARIIGVIFDWDQHSNELCAEINDLNEYLPLY AFINTTSSLDVSLNEMRMALYFFEYTLNAAEDIAQHIEQYTAEYMDSITPPLTKALFNYVKEGKYTFCTPGHMAGTAFQK SPVGSLFYDFFGANTLKADISISVTELGSLLDHTGPHLEAEEYIARTFNAEQSYMVTNGTSTANKIIGMYSSPAGSTVLI DRNCHKSLTHLLMMSDIIPVYLCPARNAYGILGGIPQREFTKTSIEAKVAQTNNASWPVHAVITNSTYDGLLYNTNYIKQ TLDVSSIHFDSAWVPYTNFHEIYEGKSGMSGERMVGKVFYETQSTHKLLAAFSQASMIHIKGDYNESTFNEAYMMHTTTS PNYGIVASMETAAAMMRGNPGRRMILRSIERAMHFRKEVRRLRSESDNWFFDVWQPEDIDEIACWPLQPGQKWHGFSHAD ADHMYLDPIKVTILTPGMSHEGVLEEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMSLLRGLTDFKRAF DLNLRIKNMLPDLFAEDPDFYRHMRIQDLAAGIHNMIRQHDLPRLMRKSFDVLPEMKLTPYNMFQQQIRGNIVACDMADL IGKVVANMILPYPPGVPLVMPGEMITEESRAVLDFLLMLCAIGARYPGFETDIHGAKRDDDGRYWVNILDTKQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 73 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 63 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_001007441.1 | lysine decarboxylase, constitutive | VFG1670 | Protein | 0.0 | 63 |
