Gene Information

Name : YE1900 (YE1900)
Accession : YP_001006162.1
Strain : Yersinia enterocolitica 8081
Genome accession: NC_008800
Putative virulence/resistance : Virulence
Product : periplasmic-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2085909 - 2086877 bp
Length : 969 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTATTAAGCAAAAAATACCCTACCTGCACTCTATTAGCGGCTTGACGCCTCGTTTTTTACATACCATGACCTTGTT
TACAGTCGTGGCAATTTCATTGCTGATGAACACCTCTGCATGGGCAGAAAACCAGCCAAACGATTCAAATAAAAAATTCA
AAATTGTGACAACGTTCACAATCATTCAGGATATCGCGCAAAATGTCGCCGGTGATGCTGCTATTGTTGAATCAATCACT
AAACCCGGTGCTGAAATTCATGACTATCAGCCGACCCCACGCGACATCGTGAAAGCACAGTCAGCAGACCTGATTTTATG
GAATGGCATGAATCTGGAGCGCTGGTTTGAGCGTTTCTTTGAAAATATTAAAGATGTTCCTTCGGCAGTGGTGACTGATG
GCATCACACCACTCCCCATTCGTGAAGGGCCTTATAAAGGCATTCCCAACCCTCATGCCTGGATGTCACCGTCAAACGCA
TTGATCTATATTGAAAATATTCGCAAGGCACTGGTCGAGCACGATCCTGCTCATGCTGAGACTTACAATCGCAATGCCAA
AGCCTACGCAGAAAAAATTGCGGCATTAGATGCCCCGCTGCGCGAGCGTTTATCCCGAATTCCGCAAGAACAGCGCTGGC
TGGTCACCAGTGAAGGCGCTTTTAGCTATCTGGCAAAAGATTATGGCTTCAAAGAGGTTTATTTATGGCCAATCAATGCT
GAAGAGCAAGGCTCACCGCAGCAGGTGCGTCGTGTCATTGATACCATGCGCACCAATAAAATCCCGGTAATATTTAGTGA
AAGCACTATTTCTGATAAACCCGCCAGGCAAGTCAGCAAAGAAACCGGTGCGCAATACGGTGGGGTGTTATATGTTGATT
CTTTATCGAATGAGAAAGGACCCGTTCCTACTTATATCGATTTGATTAACACCACAGTGCAAACTATCGCGAAAGGATTT
GGTCAATGA

Protein sequence : 
MFIKQKIPYLHSISGLTPRFLHTMTLFTVVAISLLMNTSAWAENQPNDSNKKFKIVTTFTIIQDIAQNVAGDAAIVESIT
KPGAEIHDYQPTPRDIVKAQSADLILWNGMNLERWFERFFENIKDVPSAVVTDGITPLPIREGPYKGIPNPHAWMSPSNA
LIYIENIRKALVEHDPAHAETYNRNAKAYAEKIAALDAPLRERLSRIPQEQRWLVTSEGAFSYLAKDYGFKEVYLWPINA
EEQGSPQQVRRVIDTMRTNKIPVIFSESTISDKPARQVSKETGAQYGGVLYVDSLSNEKGPVPTYIDLINTTVQTIAKGF
GQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-90 64
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 2e-90 60
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 2e-90 60
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 2e-90 60
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-90 60

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YE1900 YP_001006162.1 periplasmic-binding protein BAC0439 Protein 2e-127 86
YE1900 YP_001006162.1 periplasmic-binding protein BAC0349 Protein 7e-91 60

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
YE1900 YP_001006162.1 periplasmic-binding protein VFG0525 Protein 7e-91 60