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Name : YE1112 (YE1112) Accession : YP_001005441.1 Strain : Yersinia enterocolitica 8081 Genome accession: NC_008800 Putative virulence/resistance : Virulence Product : outer membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 1245760 - 1248333 bp Length : 2574 bp Strand : - Note : Similar to Salmonella typhimurium outer membrane usher protein LpfC precursor or stm3638 SWALL:LPFC_SALTY (SWALL:P43662) (842 aa) fasta scores: E(): 8.1e-133,47.13 38d in 855 aa and to Escherichia coli O157:H7 putative outer membrane protein YraJ or Z4500 DNA sequence : TTGGCGGCACTTCCGATGTTGCCACTGCCACCTTATAAATCCGGATTAACCACCATGACGCAGCTTCATTTTGCTTTACC TCCTGCTCGTCGCGCTTTAGGGCTGGCGATTCAGTTGGCACTGGGATTAACCGCCTTATCGGCCCCCGCCTGGGCTGAAG ATTATTTCAATCCCAGCTCGTTAGAAATCAAGGACGCTAGCTACGCGGCGATTGATCTCAGTATTTTCTCCCAATCGGGC GCACAGTTACCCGGGACTTATCGGGTAGATATCTATCTTAACGGCCAGCAAATAGAAACGCGTGATGTCACCTTTATTGC CGATAATGGCAGCTTATTGGCCGAAATCACCCCGCAGCAATTAGCCGATTTAGGGGTGAAAGTAGCGGCCTTCCCGGCTC TGCAACAGCAACCGGCCGACCTGCCTGTTACACAATTGGGTGAATTTATCCCCGCCGCCAGCAGCAGTTTTGATTTTAAT AAACAGCGGCTGGATGTGAGTATTCCGCAGGCGGCGCTCAACAGTCAGGCGCGTGGCTATATTGACCCTAAACAGTGGGA TCAAGGTATCCCTGCGCTGATGGTCAATTACAACCTGAGCGGGGCTAATAGCTGGCAAGATAACCGACCGGGCAGCAACA GCAACCACTTCCTCAACCTGCGCAGCGGGCTGAACTGGGGGCCGTGGCGCTTGCGTAACTATTCCACCTATAGCCAAAGT AGCAATGGCGAGCCGCAGTGGAATAACCTGACCAATACTTTACAACGCGATATTCACGCCATCAAAGGCCAACTGACACT GGGCGACAGCTACACCCCCGGCGATATCCTGAGCGGGGTGCCATTCCGTGGCGCGCAGTTAGCCTCTGATGACAGCATGT TGCCCGACAGCTTGCGCGGTTTTGCCCCAGTGGTGCGCGGTATTGCTGACAGCAACGCGCAGGTTACCATTCGCCAGAAC AATAATGTGATTTACCAAACCTATGTGCCACCGGGGGCTTTTGAAATTAATGACCTGTTCCCGACCTCTTCCAGTGGCGA TTTGGAAGTGACCATCAAAGAAACCGATGGCCGCGAGCGCAGCTTTAAACAGGCGTTTTCTTCCGCGCCGATTATGCAGC GCGAGGGCAGCCTAAAATATGCGCTGAGCGCCGGTCAATATCGTGGCGGTGGCAATGGCAGCCCCACCCCGAACTTTGCC CAGACCTCGCTGGCCTACGGCATGCCGTACGGCTTTACCCTGTATAACGGCTTATTGATTTCATCTGATTATCAGGCCGG TGCGCTGGGGGTGGGAATAGGTTTAGGTAGCATGGGGTCGGTATCAGCGGATGTAACGCAAGCCAAAACCACTTTTAGCG ATCAAACTACCCGGCAGGGGCAATCTTATCGGCTACAATATGCCAAAAGCATTACCGCTACCGGCACTAACTTCTCGCTC GGCAGCCACCGTTATTCCACGGAAGGTTTTTATGATTTCAGTGAAGCCAATCAACTGAGCGACGTGGGCAGCATTCATTC GCTGGGGCGCAACAATAATAAGCGCAGCCGTACTCAGTTGCATATCAGTCAGTCACTGAATGATTTCGGTAGTTTGTACC TTTCGGCTTATCAACAGGATTACTGGCAGCGCAAAGGTTACGAACGCAGTGCCACGCTGGGCTACAACATTTCGCTCTCG GGCATTAGCTATAGCCTGAACTACAGCTATAGCCAAACCCCCGGCCAGCAACAAAACGACCAGCGCGCCAGCTTGAGTGT CAATATCCCATTGGGTCGCCATAACTGGGCCAATTACAGTATTAACACCAGCAAAGGCGGGGCCACCAGTCAGCAGTTGG GCCTGAGTGGCAGTGCACTGGCAGATGATAATCTCAGCTACAACCTGCAACAGAGCCGCAGCAATCACGGCGGTGGCAAT AGCGGTAGCCTGAGCAGCAGCTATAGCGGCGCTTACGGCCAGATGAATGCCGGTTACAGCTTCGGCAGCAACAGCCGTCA GTTGAACTATGGCCTGAGCGGCGGTGTGCTGGCGCACCCTTACGGTGTCACCTTGTCACAATCGCAGAGCGATACCTTAG TATTGGTGCGCGCCCCCGGTGCCAGTGGTGTTGGCGTCGGCAATGGTCGCGGGGTGAAAACCGATTGGCGCGGCTATGCC GTGGTGCCTTATGCCAGCGCTTATCGCCAAAACAGCGTAGCGCTGGATACCCAAAGCATGGGTGACAGTATCGATATGGA TATTACCAGCCAAAACGTGGTGCCAACACGCGGCGCGGTGGTGCTGGCTAACTTCCAGCCGCGCCTCGGTAGCCGGGTGC TGATTAACCTGAGTTATCAGGGTAAGCCGGTGCCATTCGGCGCCATGGCCAGCTTGCAAGATGATGGTGCAGACAGCAAC AGCATCGTCGGTGATGGCGGCCAGGTGTATCTCAGTGGCGTGCCGGATAACGGCAACTTGCTGGTGCAATGGGGCAATCA GGAAAAGCAGCAGTGTCAGGTGAAATTTACCTTACCGGCAGCGGATACCAATACCACTTCGGCAGTGCGCATATTAGATG CGGTTTGCCGGTAA Protein sequence : MAALPMLPLPPYKSGLTTMTQLHFALPPARRALGLAIQLALGLTALSAPAWAEDYFNPSSLEIKDASYAAIDLSIFSQSG AQLPGTYRVDIYLNGQQIETRDVTFIADNGSLLAEITPQQLADLGVKVAAFPALQQQPADLPVTQLGEFIPAASSSFDFN KQRLDVSIPQAALNSQARGYIDPKQWDQGIPALMVNYNLSGANSWQDNRPGSNSNHFLNLRSGLNWGPWRLRNYSTYSQS SNGEPQWNNLTNTLQRDIHAIKGQLTLGDSYTPGDILSGVPFRGAQLASDDSMLPDSLRGFAPVVRGIADSNAQVTIRQN NNVIYQTYVPPGAFEINDLFPTSSSGDLEVTIKETDGRERSFKQAFSSAPIMQREGSLKYALSAGQYRGGGNGSPTPNFA QTSLAYGMPYGFTLYNGLLISSDYQAGALGVGIGLGSMGSVSADVTQAKTTFSDQTTRQGQSYRLQYAKSITATGTNFSL GSHRYSTEGFYDFSEANQLSDVGSIHSLGRNNNKRSRTQLHISQSLNDFGSLYLSAYQQDYWQRKGYERSATLGYNISLS GISYSLNYSYSQTPGQQQNDQRASLSVNIPLGRHNWANYSINTSKGGATSQQLGLSGSALADDNLSYNLQQSRSNHGGGN SGSLSSSYSGAYGQMNAGYSFGSNSRQLNYGLSGGVLAHPYGVTLSQSQSDTLVLVRAPGASGVGVGNGRGVKTDWRGYA VVPYASAYRQNSVALDTQSMGDSIDMDITSQNVVPTRGAVVLANFQPRLGSRVLINLSYQGKPVPFGAMASLQDDGADSN SIVGDGGQVYLSGVPDNGNLLVQWGNQEKQQCQVKFTLPAADTNTTSAVRILDAVCR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 9e-144 | 44 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 5e-150 | 44 |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 1e-131 | 42 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 9e-129 | 42 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 9e-129 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| YE1112 | YP_001005441.1 | outer membrane usher protein | VFG0454 | Protein | 9e-170 | 48 |
| YE1112 | YP_001005441.1 | outer membrane usher protein | VFG1645 | Protein | 3e-150 | 44 |
| YE1112 | YP_001005441.1 | outer membrane usher protein | VFG0912 | Protein | 7e-151 | 44 |
| YE1112 | YP_001005441.1 | outer membrane usher protein | VFG0876 | Protein | 1e-145 | 43 |
| YE1112 | YP_001005441.1 | outer membrane usher protein | VFG0446 | Protein | 3e-141 | 42 |
