|
Name : tnp (YE1001) Accession : YP_001005334.1 Strain : Yersinia enterocolitica 8081 Genome accession: NC_008800 Putative virulence/resistance : Unknown Product : transposase for IS1541 Function : - COG functional category : L : Replication, recombination and repair COG ID : COG1943 EC number : - Position : 1122080 - 1122538 bp Length : 459 bp Strand : + Note : Previously sequenced as Yersinia enterocolitica IS1541 element transposase Tnp SWALL:Q9X9G7 (EMBL:AJ238016) (152 aa) fasta scores: E(): 1.2e-66, 100 id in 152 aa. Also similar to many other IS200-like transposases e.g. Salmonella typhimurium, and Salmonel DNA sequence : ATGGGGGACGAAAAGAGCTTAGCGCACACCCGATGGAACTGTAAATATCACATAGTTTTCGCGCCTAAATACCGAAGACA GGTTTTCTACGGCGAGAAACGCCGGGCAGTGGGGAGTATCCTAAGAAAGCTGTGTGAATGGAAAAATGTGCACATTCTGG AAGCGGAGTGCTGTGCAGATCACATCCATATGCTTGTGGAAATCCCGCCGAAGATGAGCGTATCAAGCTTCATGGGGTAT CTGAAGGGCAAAAGTAGCCTGATGTTGTATGAGCAATTTGGAGATTTGAAATTCAAATACAGGAACAGAGAGTTTTGGTG CAGAGGGTATTATGTGGATACGGTGGGTAAAAATACCTCGAAGATCCGGGACTACATAAAGCACCAACTGGAGCAGGATA AACTGGGGGAACAACTATCAATTCCGTACCCCGGTAGCCCGTTTACGGGCAGTAAGTAA Protein sequence : MGDEKSLAHTRWNCKYHIVFAPKYRRQVFYGEKRRAVGSILRKLCEWKNVHILEAECCADHIHMLVEIPPKMSVSSFMGY LKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTSKIRDYIKHQLEQDKLGEQLSIPYPGSPFTGSK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tnpA | NP_455584.1 | transposase for insertion sequence element is200 | Not tested | SPI-5 | Protein | 6e-67 | 95 |
| CPR_0382 | YP_697711.1 | IS1469, transposase | Not tested | Not named | Protein | 2e-43 | 65 |
| SP_1064 | NP_345538.1 | IS200 family transposase | Not tested | PPI-1 | Protein | 3e-47 | 62 |
| ef0123 | AAM75324.1 | EF0123 | Not tested | Not named | Protein | 5e-33 | 55 |
| EF0615 | NP_814372.1 | IS200 family transposase | Not tested | Not named | Protein | 7e-33 | 55 |
