Gene Information

Name : yscF (YEP0041)
Accession : YP_001004093.1
Strain :
Genome accession: NC_008791
Putative virulence/resistance : Virulence
Product : putative type III secretion protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 31360 - 31623 bp
Length : 264 bp
Strand : +
Note : Previously sequenced: Yersinia enterocolitica yop proteins translocation protein F YscF SWALL:YSCF_YEREN (SWALL:Q01247) (87 aa) fasta scores: E(): 1.1e-27, 94.25 id in 87 aa. Also highly similar to Yersinia pestis yop proteins translocation protein F homo

DNA sequence : 
ATGAGTAATTTCTCTGGGTTTGCAAAAGGAACCGATATCACAGACTTAGATGCGGTGGCTCAAACGCTCAAGAAGCCAGC
AGACGGCGCAAACAAAGCGGTTAATGACTCGATAGCAGCGTTGAAAGAGACGCCTGACAACCCGGCGCTACTTGCTGACT
TACAACATTCAATTAATAAATGGTCGGTAATTTACAATATAAGCTCAACCATAGTTCGTAGCATGAAAGACTTAATGCAA
GGCATCCTACAGAAGTTCCCATAA

Protein sequence : 
MSNFSGFAKGTDITDLDAVAQTLKKPADGANKAVNDSIAALKETPDNPALLADLQHSINKWSVIYNISSTIVRSMKDLMQ
GILQKFP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscF AAO18031.1 LscF Virulence TTSS locus Protein 1e-23 72

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscF YP_001004093.1 putative type III secretion protein VFG0405 Protein 9e-34 94
yscF YP_001004093.1 putative type III secretion protein VFG0214 Protein 2e-19 66