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Name : yscD (YEP0039) Accession : YP_001004091.1 Strain : Genome accession: NC_008791 Putative virulence/resistance : Virulence Product : putative type III secretion protein Function : - COG functional category : - COG ID : - EC number : - Position : 29907 - 31163 bp Length : 1257 bp Strand : + Note : Previously sequenced: Yersinia enterocolitica yop proteins translocation protein D YscD SWALL:YSCD_YEREN (SWALL:Q01245) (418 aa) fasta scores: E(): 5.1e-158,99.04 38d in 418 aa. Also highly similar to Yersinia pestis kim5 YscD or Ypcd1.53 SWALL:Q56975 (EM DNA sequence : GTGAGTTGGGTCTGTCGTTTTTATCAAGGGAAGCACCGTGGTGTTGAAGTTGAGCTTCCTCATGGGCGTTGTGTTTTTGG TTCAGACCCGTTGCAATCAGATATTGTTCTTTCTGACAGCGAAATAGCACCCGTGCATTTAGTGCTGATGGTCGATGAAG AAGGTATTCGTCTAACTGATTCTGCAGAACCTCTACTACAAGAAGGGCTTCCCGTGCCGTTGGGGACTCTTCTTCGCGCG GGCTCTTGTCTGGAAGTAGGGTTTTTACTGTGGACATTTGTCGCCGTAGGGCAACCTTTGCCAGAGACGTTACAGGTTCC CACGCAGAGAAAAGAGCCAACCGACAGGTTACCTCGTTCACGACTTGGGATTGTGCTTGGAGTTCTTTCTTTATTGTTGC TTTTGACTTTTTTGGGGATGCTAGGGCACGGGTTGTGGCGCGAGTATAACCAGGATGGACAACTTGTTGAGCAAGAAGTA CGGCGCTTGCTGGCAACTGCTGCCTACAAGGATGTCGTTTTAACATCGCCCAAAGAGGGTGAACCTTGGTTATTAACTGG TTATATCCAGGATAATCATGCCCGCTTGTCACTGCAAAATTTTCTTGAGAGCCATGGTATTCCATTCCGGCTTGAACTGC GCAGCATGGAAGAACTGCGTCAGGGGGCAGAATTCATTCTGCAACGGTTGGGATACCATGGAATTGAGGTTTCTTTAGCA CCGCAAGCGGGATGGCTACAATTGAATGGGGAAGTGTCAGAGGAAATACAAAAGCAAAAAATTGATAGCCTGCTGCAAGC TGAAGTGCCAGGGCTGCTCGGTGTAGAAAATAAAGTGCGGATTGCCGGTAATCAACGCAAGCGGCTTGATGCATTACTTG AACAATTTGGTCTGGATTCAGATTTCACGGTAAATGTTAAAGGTGAGCTGATTGAATTACGCGGGCAAGTCAATGATGAA AAATTGAGTTCATTTAATCAACTACAACAAACTTTTCGCCAAGAGTTTGGCAATCGACCTAAATTAGAACTGGTCAATGT CGGGGGGCAACCCCAGCATGATGAATTGAATTTTGAGGTGCAAGCTATCTCGTTAGGGAAAGTGCCCTATGTGGTACTCG ACAATCATCAACGCTATCCAGAAGGCGCCATACTTAACAATGGCGTTCGTATTCTGGCTATTCGACGCGATGCGGTGATT GTGAGTAAAGGAAAACGGGAATTTGTGATCCAGCTCAATGGAGGTAAACCTCAATGA Protein sequence : MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRA GSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIVLGVLSLLLLLTFLGMLGHGLWREYNQDGQLVEQEV RRLLATAAYKDVVLTSPKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSLA PQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVENKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVNDE KLSSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVI VSKGKREFVIQLNGGKPQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscD | AAO18032.1 | LscD | Virulence | TTSS locus | Protein | 7e-83 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscD | YP_001004091.1 | putative type III secretion protein | VFG0403 | Protein | 7e-180 | 99 |
| yscD | YP_001004091.1 | putative type III secretion protein | VFG0212 | Protein | 1e-75 | 43 |
