|
Name : yscC (YEP0038) Accession : YP_001004090.1 Strain : Genome accession: NC_008791 Putative virulence/resistance : Virulence Product : putative type III secretion protein Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 28087 - 29910 bp Length : 1824 bp Strand : + Note : Previously sequenced: Yersinia enterocolitica yop proteins translocation protein C precursor YscC SWALL:YSCC_YEREN (SWALL:Q01244) (607 aa) fasta scores: E(): 0, 99.17 38d in 607 aa. Also highly similar to Yersinia pestis KIM5 or Yscc or Ypcd1.52 SWALL:Q56 DNA sequence : ATGGCTTTTCCGCTACATTCTTTTTTCAAGCGCGTACTCACCGGGACGTTACTGTTACTTTCTAGCTATAGCTGGGCGCA AGAACTTGATTGGTTGCCTATACCTTATGTTTATGTGGCGAAGGGGGAAAGTTTACGCGATTTATTAACTGATTTCGGCG CTAATTATGATGCTACAGTGGTAGTAAGCGATAAGATTAATGACAAAGTTTCCGGCCAGTTTGAGCATGATAACCCTCAG GATTTCCTACAGCATATTGCCTCCCTTTACAATTTGGTTTGGTACTATGATGGCAATGTGCTCTACATTTTTAAAAATAG TGAGGTAGCGTCTCGTCTCATTCGTTTACAGGAAAGTGAGGCCGCAGAGTTAAAGCAGGCATTACAACGTTCTGGTATAT GGGAGCCTCGTTTTGGCTGGCGCCCTGATGCTAGCAACCGCCTGGTTTACGTCTCTGGTCCTCCTCGTTATCTTGAATTG GTTGAACAGACCGCAGCCGCATTGGAACAACAGACGCAAATTCGCAGTGAAAAAACAGGGGCATTAGCGATTGAGATTTT CCCTCTCAAATATGCATCAGCGAGCGACCGAACTATTCATTACCGTGATGACGAAGTGGCTGCTCCTGGGGTTGCAACGA TACTTCAACGCGTGTTAAGCGATGCTACTATCCAACAAGTGACAGTGGATAATCAGAGAATACCGCAGGTCGCAACCCGG GCTTCAGCTCAAGCCAGGGTTGAAGCGGATCCATCGCTCAATGCGATAATAGTGCGCGATTCTCCTGAGCGTATGCCAAT GTATCAACGGTTAATTCATGCGCTTGATAAGCCTAGCGCTCGTATTGAAGTGGCGTTATCCATTGTCGATATAAATGCCG ACCAACTTACTGAATTAGGTGTGGACTGGCGAGTTGGCATTCGTACTGGCAACAATCATCAGGTGGTAATAAAAACAACG GGGGATCAAAGTAACATCGCTTCAAACGGTGCATTGGGTAGTTTGATTGATGCACGCGGGCTTGACTACCTATTAGCAAG AGTCAATTTACTTGAAAATGAAGGTTCGGCTCAAGTTGTTTCACGTCCGACCCTGTTAACACAAGAAAATGCCCAAGCGG TGATTGATCACAGTGAAACCTATTACGTCAAAGTGACAGGTAAAGAAGTGGCTGAACTGAAAGGGATCACCTACGGCACT ATGCTGCGTATGACGCCAAGGGTGCTGACTCAAGGAGATAAGTCAGAAATCAGTCTCAATCTACACATTGAGGATGGGAA CCAAAAACCGAATAGTTCAGGGATTGAAGGAATCCCCACTATCAGTCGTACGGTCGTTGATACTGTCGCTCGCGTGGGAC ATGGCCAGAGTTTGATTATTGGTGGTATTTATCGTGACGAATTGAGTGTTGCTCTTAGTAAGGTGCCTTTGCTTGGTGAT ATTCCTTATCTTGGCGCACTTTTCCGCCGTAAAAGTGAGTTAACTCGCCGTACGGTACGGCTATTTATCATCGAACCACG GATTATTGACGAAGGTATTGCGCATCATTTAGCGTTAGGTAATGGTCAGGATCTACGTACTGGTATCTTAGCTGTTGATG AAATATCTAATCAAAGCACTACCTTGAATAAGTTATTAGGTGGCTCCCAGTGTCAGCCTTTAAACAAAGCGCAAGAAGTG CAGAAATGGCTGAGTCAAAACAATAAATCATCCTATCTTACTCAGTGCAAGATGGACAAAAGTTTGGGATGGCGCGTGGT TGAAGGTGCTTGTACTCCCGCGGAATCATGGTGTGTTTCAGCGCCTAAGCGTGGCGTATTGTGA Protein sequence : MAFPLHSFFKRVLTGTLLLLSSYSWAQELDWLPIPYVYVAKGESLRDLLTDFGANYDATVVVSDKINDKVSGQFEHDNPQ DFLQHIASLYNLVWYYDGNVLYIFKNSEVASRLIRLQESEAAELKQALQRSGIWEPRFGWRPDASNRLVYVSGPPRYLEL VEQTAAALEQQTQIRSEKTGALAIEIFPLKYASASDRTIHYRDDEVAAPGVATILQRVLSDATIQQVTVDNQRIPQVATR ASAQARVEADPSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIKTT GDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHSETYYVKVTGKEVAELKGITYGT MLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGIEGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGD IPYLGALFRRKSELTRRTVRLFIIEPRIIDEGIAHHLALGNGQDLRTGILAVDEISNQSTTLNKLLGGSQCQPLNKAQEV QKWLSQNNKSSYLTQCKMDKSLGWRVVEGACTPAESWCVSAPKRGVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lscC | AAO18033.1 | LscC | Virulence | TTSS locus | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| yscC | YP_001004090.1 | putative type III secretion protein | VFG0402 | Protein | 0.0 | 99 |
| yscC | YP_001004090.1 | putative type III secretion protein | VFG0211 | Protein | 0.0 | 64 |
