Gene Information

Name : virF (YEP0035)
Accession : YP_001004087.1
Strain :
Genome accession: NC_008791
Putative virulence/resistance : Virulence
Product : virulence regulon transcriptional activator
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 26450 - 27265 bp
Length : 816 bp
Strand : +
Note : Previously sequenced: Yersinia enterocolitica virulence regulon transcriptional activator VirF SWALL:VIRF_YEREN (SWALL:P13225) (271 aa) fasta scores: E(): 9.7e-110, 98.52 38d in 271 aa. Also highly similar to Yersinia pestis thermoregulatory protein LcrF

DNA sequence : 
ATGGCATCACTAGAGATTATTAAATTAGAATGGGCCACACCTATATTTAAGGTTGTTGAGCATTCACAAGATGGCCTATA
TATTCTTTTGCAAGGTCAGGTTTCATGGCAGAACAGCAGTCAGACATATGATTTAGATGAGGGGAATATGCTGTTTTTGC
GTCGTGGCAGCTATGCTGTTCGATGTGGTACAAAAGAACCCTGCCAATTACTTTGGATTCCATTACCAGGCAGTTTTTTG
AGTACTTTTTTACATCGGTTTGGTTCTTTGCTTAGTGAAATTAGACGAGACAATTCCACACCTAAGCCATTGTTAATTTT
TAATATTTCACCAATATTATCACAATCCATTCAAAATCTATGTGCCATATTGGAACGGAGTGATTTTCCGTCAGTATTAA
CGCAACTGCGTATTGAGGAATTACTGCTTTTGCTTGCCTTTAGCTCGCAAGGGACTTTATTCCTCTCGGCTCTACGCCAT
TTAGGCAACCGCCCAGAAGAACGGTTGCAAAAATTTATGGAGGAAAATTATCTACAAGGGTGGAAACTAAGCAAATTTGC
GCGAGAATTCGGCATGGGACTAACCACATTCAAAGAACTGTTTGGTACAGTTTATGGCATTTCACCACGCGCCTGGATAA
GCGAGCGACGTATTCTCTATGCTCACCAATTACTTCTTAATTGTAAGATGAGTATTGTTGATATTGCCATGGAAGCAGGG
TTCTCGAGTCAGTCTTATTTCACTCAAAGTTATCGACGTCGCTTCGGATGCACTCCCAGCCAAGCCCGTCTTACTAAAAT
AGCAACCACAGGCTAA

Protein sequence : 
MASLEIIKLEWATPIFKVVEHSQDGLYILLQGQVSWQNSSQTYDLDEGNMLFLRRGSYAVRCGTKEPCQLLWIPLPGSFL
STFLHRFGSLLSEIRRDNSTPKPLLIFNISPILSQSIQNLCAILERSDFPSVLTQLRIEELLLLLAFSSQGTLFLSALRH
LGNRPEERLQKFMEENYLQGWKLSKFAREFGMGLTTFKELFGTVYGISPRAWISERRILYAHQLLLNCKMSIVDIAMEAG
FSSQSYFTQSYRRRFGCTPSQARLTKIATTG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscA AAO18036.1 LscA Virulence TTSS locus Protein 2e-82 63

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
virF YP_001004087.1 virulence regulon transcriptional activator VFG0399 Protein 8e-119 98
virF YP_001004087.1 virulence regulon transcriptional activator VFG0208 Protein 2e-70 57