Gene Information

Name : yscT (YEP0030)
Accession : YP_001004084.1
Strain :
Genome accession: NC_008791
Putative virulence/resistance : Virulence
Product : putative type III secretion protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 23506 - 24291 bp
Length : 786 bp
Strand : +
Note : Previously sequenced: Yersinia enterocolitica YscT SWALL:Q93KT5 (EMBL:AF336309) (261 aa) fasta scores: E(): 3e-95, 100 38d in 261 aa. Also highly similar to Yersinia pestis, and Yersinia pseudotuberculosis yop proteins translocation protein T YscT or Ypcd

DNA sequence : 
ATGATAGCGGATTTAATCCAAAGACCATTGCTCACTTATACCCTGCTGTTGCCTCGTTTTATGGCTTGTTTTGTTATATT
GCCAGTGTTAAGTAAACAGCTCCTCGGTGGAGTATTGCTGCGTAATGGTATTGTCTGTTCATTGGCTCTTTATGTCTATC
CTGCCGTCGCTAACCAACCTTATATTGAGGTTGATGCGTTTACGTTAATGCTGCTTATCGGCAAAGAGTTCATACTGGGG
TTATTGATTGGGTTTGTGGCCACCATCCCTTTCTGGGCCTTAGAATCCGCAGGATTTATTGTAGATAACCAAAGAGGTGC
CGCGATGGCATCTCTACTCAACCCTGGACTTGATAGTCAAACCAGTCCGACTGGTTTACTTTTGACTCAAACGTTAATAA
CAATTTTCTTCAGCGGAGGGGCTTTCCTCTCTTTGCTTTCAGCCCTCTTTCACAGCTATGTAAATTGGCCGGTGGCCAGC
TTTTTCCCTGAAGTTAGTGAACAGTGGGTTGATTTCTTTTATAACCAATTCAGCCAGATACTATTAATCGCCGCTGTATT
GGCTGCTCCTTTACTCATCGCTATGTTTTTAGCTGAATTTGGACTTGCACTCATCAGTCGTTTTGCGCCTTCTTTAAACG
TCTTTGTGCTGGCTATGCCGATAAAAAGCGCGATAGCAAGCCTGTTGTTGGTTATCTACTGTATGCAAATGATGAGTCAT
GCCAGTAAAGTAATGCTGTTGGTTATGGATCCTATAAGTTTACTGATCCCTGTTTTGGAGAAGTAA

Protein sequence : 
MIADLIQRPLLTYTLLLPRFMACFVILPVLSKQLLGGVLLRNGIVCSLALYVYPAVANQPYIEVDAFTLMLLIGKEFILG
LLIGFVATIPFWALESAGFIVDNQRGAAMASLLNPGLDSQTSPTGLLLTQTLITIFFSGGAFLSLLSALFHSYVNWPVAS
FFPEVSEQWVDFFYNQFSQILLIAAVLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIYCMQMMSH
ASKVMLLVMDPISLLIPVLEK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscT AAO18038.1 LscT Virulence TTSS locus Protein 1e-55 71

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yscT YP_001004084.1 putative type III secretion protein VFG0396 Protein 4e-84 99
yscT YP_001004084.1 putative type III secretion protein VFG0186 Protein 2e-51 69